View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14079_high_2 (Length: 612)
Name: NF14079_high_2
Description: NF14079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14079_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 19 - 402
Target Start/End: Complemental strand, 41615134 - 41614751
Alignment:
| Q |
19 |
ttgcctagcaaatattctttagctcaaactattaaataatggaacaagaagagataaagtgaatattcttgaactattgaaaaatagaataatctgaatg |
118 |
Q |
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| T |
41615134 |
ttgcctagcaaatattctttagctcaaactattaaataatggaacaagaagagataaagtgaatattcttgaactattgaaaaatagaataatctgaatg |
41615035 |
T |
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| Q |
119 |
caattggaaaggagtgtctatacaagaggaactcaaagagatatagtagactaatccaacctaattagattggttataataacaaactaaccaattaggg |
218 |
Q |
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| T |
41615034 |
caattggaaaggagtgtctatacaagaggaactcaaagagatatagtagactaatccaacctaattagattggttataataacaaactaaccaattaggg |
41614935 |
T |
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| Q |
219 |
aaggctaactgaaaattaaaatacttctttttgttgactatattacaaacttttcacttcttgcaatatagttaaccaagtggaacgttatctataaata |
318 |
Q |
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| T |
41614934 |
aaggctaactgaaaattaaaatacttctttttgttgactatattacaaacttttcacttcttgcaatatagttaaccaagtggaacgttatctataaata |
41614835 |
T |
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| Q |
319 |
atttgatcatgttgctaacaaattctccctttccataccgatttctaattactaactcttgcttataataatattataaatatt |
402 |
Q |
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| T |
41614834 |
atttgatcatgttgctaacaaattctccctttccataccgatttctaactactaactcttgcttataataatattataaatatt |
41614751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 403 - 607
Target Start/End: Complemental strand, 41614696 - 41614492
Alignment:
| Q |
403 |
gagttaagacaatatgcgaaataaagaaaagacacatcattttttgttgcaaaagatgaaaaagaaatacaaataattgtaatttgtattcgtacaaaaa |
502 |
Q |
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| T |
41614696 |
gagttaaaaaaatatgcgaaataaagaaaagacacatcattttttattgcaaaagatgaaaaagaaatacaaatgattgtcatttgtattcgtacaaaaa |
41614597 |
T |
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| Q |
503 |
atattgatgaaactatgtatggcttgctcnnnnnnnnnnnnnnnnnnnnnnctatgtacgggttgcattttgcattgcaagtcgcacaaccttcgttgtt |
602 |
Q |
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| T |
41614596 |
atattgatgaaactatgcatggcttgctcaaaaaaagaaggaaaaagaaaactatgtacgggttgcattttgcattgcaagtcgcacgacctccgttgtt |
41614497 |
T |
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| Q |
603 |
atctt |
607 |
Q |
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| T |
41614496 |
atctt |
41614492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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