View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14079_high_3 (Length: 591)
Name: NF14079_high_3
Description: NF14079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14079_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 104 - 561
Target Start/End: Complemental strand, 3684672 - 3684222
Alignment:
| Q |
104 |
tcctaccacactcctagtgcccaaaatcaaaggaagaatggatcaagcatactccaccagagcgaagagacacaagtgataagcaagcagactcgaacaa |
203 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| || |
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| T |
3684672 |
tcctaccacactcctattgcccaaaatcaaaggaagaatggatcaagcatactccaccagagcgaagagacacaagtgataaggaagcaggttcgaaaaa |
3684573 |
T |
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| Q |
204 |
ccccacttaaagacacccaaacaagcaccccacatagtgagactaccaactccagcagagaattggttccaccagccactcatagtgggaacaaggagca |
303 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
3684572 |
ccccacttaaagacacccaaacaagcaccccacacagtgagactaccgactccagcagagaactggttccaccagccactcatagtgggaacaaggagaa |
3684473 |
T |
|
| Q |
304 |
tcaatgtgtttctcaaaaaaccaataccacggccacggctcttatgaactaattcctccacatttagtacttactagaaaacagaacatcattaaaggat |
403 |
Q |
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|||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3684472 |
tcaatgtgtttcccaaaaaaccaatacca------cggctcttatgaactaagtcctccacatttagtacttactagaaaacaaaacatcattaaaggat |
3684379 |
T |
|
| Q |
404 |
gtctatatagaccacacgacagtatgtcaaaccaacaaaaaatcacaagtaatcttttctctccccgctaaccccaagaacacctaaaaaaggaccaacc |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3684378 |
gtctatatagaccacacgacagtatgtcaaaccaacaaaatatcacacctaatcttttctctccccgctaaccccaagaacacct-aaaaaggaccaacc |
3684280 |
T |
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| Q |
504 |
aaatccatagcaaaatccacttccaccataaccatctagaatcctatgccaaaccgta |
561 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3684279 |
gaatccatagcaaaatccacttccaccataaccatctagaatcatatgccaaaccgta |
3684222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 3684774 - 3684740
Alignment:
| Q |
1 |
accagaacaccaatagaaaagtcacaccaaacaac |
35 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
3684774 |
accagaacaccaatagaaaagtcacaccaaacaac |
3684740 |
T |
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