View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14079_high_6 (Length: 425)

Name: NF14079_high_6
Description: NF14079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14079_high_6
NF14079_high_6
[»] chr8 (12 HSPs)
chr8 (17-415)||(36184214-36184612)
chr8 (21-179)||(36209602-36209761)
chr8 (21-179)||(36196479-36196637)
chr8 (290-397)||(36207675-36207778)
chr8 (17-179)||(36188154-36188319)
chr8 (288-409)||(36200813-36200933)
chr8 (303-402)||(36209785-36209879)
chr8 (288-342)||(36213154-36213209)
chr8 (303-402)||(36188343-36188438)
chr8 (303-402)||(36196661-36196756)
chr8 (54-177)||(36200422-36200545)
chr8 (259-402)||(36214651-36214790)


Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 17 - 415
Target Start/End: Original strand, 36184214 - 36184612
Alignment:
Q  17 cagttacaatatgttatactatttagcaaaagtgacatgttaacagaaccaaccataccaaacatagttcaaaccattttatcgaagaggaagttaaatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36184214 cagttacaatatgttatactatttagcaaaagtgacatgttaacagaaccaaccataccaaacatagttcaaaccattttatcgaagaggaagttaaatt 36184313  T
Q  117 ccctcctcccttgaaagaaccgcagtggaaattactgcaagaaacaagtgaaatcttaccatagctcaaggtgtattcaagtgtaactaacaagaaacaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36184314 ccctcctcccttgaaagaaccgcagtggaaattactgcaagaaacaagtgaaatcttaccatagctcaaggtgtattcaagtgtaactaacaagaaacaa 36184413  T
Q  217 acaaagtgtcattagatttgacactatatacaataatagactatcatgacagttattattatctgcactggattcatatcttagattacaagcacaagca 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36184414 acaaagtgtcattagatttgacactatatacaataatagactatcatgacagttattattatctgcactggattcatatcttagattacaagcacaagca 36184513  T
Q  317 tttaacagaaaaacaaaatcttagttcatctacaacaacaaagcacttgtgaacctctctctaatctctccaacatggtgtcttccgtatgatattcat 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36184514 tttaacagaaaaacaaaatcttagttcatctacaacaacaaagcacttgtgaacctctctctaatctctccaacatggtgtcttccgtatgatattcat 36184612  T

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Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 21 - 179
Target Start/End: Original strand, 36209602 - 36209761
Alignment:
Q  21 tacaatatgttatactatttagcaaa-agtgacatgttaacagaaccaaccataccaaacatagttcaaaccattttatcgaagaggaagttaaattccc 119  Q
    |||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||| ||||   |||||||| | |||||      
T  36209602 tacaatatgttatactatttagcaaacaatgacttgttaacagaaccaaccataccaaacatagttcaaaccatcttattagagaggaaggtgaattctt 36209701  T
Q  120 tcctcccttgaaagaaccgcagtggaaattactgcaagaaacaagtgaaatcttaccata 179  Q
     |||||||| |||||||| ||| |||||||||||||||||||||| ||||||||||||||    
T  36209702 ccctccctttaaagaaccacagaggaaattactgcaagaaacaagggaaatcttaccata 36209761  T

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Target: chr8; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 21 - 179
Target Start/End: Original strand, 36196479 - 36196637
Alignment:
Q  21 tacaatatgttatactatttagcaaaagtgacatgttaacagaaccaaccataccaaacatagttcaaaccattttatcgaagaggaagttaaattccct 120  Q
    ||||||||| |||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||| |||| |||  | ||||||      
T  36196479 tacaatatgctatactatttagcaaaagtgacttgttaacagaagcaaccattccaaacatagttcaaaccattttatcaaagaagaaagtgaattcctc 36196578  T
Q  121 cctcccttgaaagaaccgcagtggaaattactgcaagaaacaagtgaaatcttaccata 179  Q
    |||||||| |||||||| |||  ||||||||||||||||||| | ||||||||||||||    
T  36196579 cctccctttaaagaaccacagacgaaattactgcaagaaacaggggaaatcttaccata 36196637  T

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Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 290 - 397
Target Start/End: Original strand, 36207675 - 36207778
Alignment:
Q  290 tcatatcttagattacaagcacaagcatttaacagaaaaacaaaatcttagttcatctacaacaacaaagcacttgtgaacctctctctaatctctccaa 389  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||    |||||||||||||||    
T  36207675 tcatatcttggattacaagcacaagcatttaacagaaaaacaaaatcttagttcatatacaacaacaaatcacatgtgaac----ctctaatctctccaa 36207770  T
Q  390 catggtgt 397  Q
    ||||||||    
T  36207771 catggtgt 36207778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 36188154 - 36188319
Alignment:
Q  17 cagttacaatatgttatactatttagcaaa-agtgacatgtt---aacagaaccaaccataccaaacatagttcaaaccattttatcgaagaggaagtta 112  Q
    ||||||||||||||||||||||||||||||   |||| ||||   |||||||| ||||||||||||| ||||||||||||||||||   |||||||| |     
T  36188154 cagttacaatatgttatactatttagcaaaccatgacttgttaacaacagaacaaaccataccaaacctagttcaaaccattttattagagaggaaggtg 36188253  T
Q  113 aattccctcctcccttgaaagaaccgcagtggaaattactgcaagaaacaagtgaaatcttaccata 179  Q
    ||||||| |||||||| ||||| || ||| |||||||||||||||||| ||| ||||||||||||||    
T  36188254 aattcccccctccctttaaagagccacagaggaaattactgcaagaaa-aagggaaatcttaccata 36188319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 288 - 409
Target Start/End: Original strand, 36200813 - 36200933
Alignment:
Q  288 attcatatcttagattacaagcacaagcatttaacagaaaa---acaaaatcttagttcatctacaacaacaaagcacttgtgaacctctctctaatctc 384  Q
    |||||||||| ||||||||||||||||| ||| ||||||||   |||||||||||||||||||||| ||||| ||||| ||| |||    | |||||| |    
T  36200813 attcatatctaagattacaagcacaagcgtttgacagaaaaaaaacaaaatcttagttcatctacaccaacacagcacctgtcaac----cactaatcac 36200908  T
Q  385 tccaacatggtgtcttccgtatgat 409  Q
    ||||||||||||  |||| ||||||    
T  36200909 tccaacatggtgctttccatatgat 36200933  T

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Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 303 - 402
Target Start/End: Original strand, 36209785 - 36209879
Alignment:
Q  303 tacaagcacaagcatttaacagaaaaacaaaatcttagttcatctacaacaacaaagcacttgtgaacctctctctaatctctccaacatggtgtcttcc 402  Q
    ||||| ||||||||||| |||||| | ||||||||||||||||||| |||  |||||||||| | |||    ||||||||||||||||||||||| ||||    
T  36209785 tacaaacacaagcatttgacagaata-caaaatcttagttcatctataactgcaaagcacttctcaac----ctctaatctctccaacatggtgttttcc 36209879  T

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Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 342
Target Start/End: Original strand, 36213154 - 36213209
Alignment:
Q  288 attcatatcttagattacaagcacaagcatttaacag-aaaaacaaaatcttagtt 342  Q
    ||||||||| |||||| ||||||||||||||| |||| ||||||||||||||||||    
T  36213154 attcatatcatagatttcaagcacaagcatttgacagaaaaaacaaaatcttagtt 36213209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 402
Target Start/End: Original strand, 36188343 - 36188438
Alignment:
Q  303 tacaagcacaagcatttaacagaaaaacaaaatcttagttcatctacaacaac-aaagcacttgtgaacctctctctaatctctccaacatggtgtcttc 401  Q
    ||||| ||||||||||| |||||| | ||||||||||||||||||| | | || ||||||||| | |||    ||||||||||||||||||||||| |||    
T  36188343 tacaaacacaagcatttgacagaata-caaaatcttagttcatctatacctacaaaagcacttctcaac----ctctaatctctccaacatggtgttttc 36188437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 402
Target Start/End: Original strand, 36196661 - 36196756
Alignment:
Q  303 tacaagcacaagcatttaacagaaaaacaaaatcttagttcatctacaacaac-aaagcacttgtgaacctctctctaatctctccaacatggtgtcttc 401  Q
    ||||| ||||||||||| |||||| | ||||||||||||||||||| | | || ||||||||| | |||    ||||||||||||||||||||||| |||    
T  36196661 tacaaacacaagcatttgacagaata-caaaatcttagttcatctatacctacaaaagcacttctcaac----ctctaatctctccaacatggtgttttc 36196755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 177
Target Start/End: Original strand, 36200422 - 36200545
Alignment:
Q  54 tgttaacagaaccaaccataccaaacatagttcaaaccattttatcgaagaggaagttaaattccctcctcccttgaaagaaccgcagtggaaattactg 153  Q
    |||||||||||| |||||||||||||  ||||||||| ||||| || ||||||||  | ||||||   ||| |||    ||||| ||  ||||| || ||    
T  36200422 tgttaacagaactaaccataccaaaccgagttcaaactattttgtcaaagaggaaagtgaattcctctctctcttttctgaaccacataggaaaataatg 36200521  T
Q  154 caagaaacaagtgaaatcttacca 177  Q
    ||||||||||| ||||||||||||    
T  36200522 caagaaacaagagaaatcttacca 36200545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 402
Target Start/End: Original strand, 36214651 - 36214790
Alignment:
Q  259 atcatgacagttattattatctgcactggattcatatctt-agattacaagcacaagcatttaacagaa-aaacaaaatcttagttcatctacaacaaca 356  Q
    ||||||||||||||||||||||  |||||  ||||||||| | |||||||||||| |||  | || ||| || |||| ||||| || ||||| | |||||    
T  36214651 atcatgacagttattattatctaaactgg--tcatatcttaaaattacaagcacatgcaactgaccgaataagcaaagtcttaattgatctataccaaca 36214748  T
Q  357 aagcacttgtgaacctctctctaatctctccaacatggtgtcttcc 402  Q
    |||||||||| ||    ||||||||||| ||||||| |||| ||||    
T  36214749 aagcacttgtcaa----tctctaatctccccaacattgtgttttcc 36214790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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