View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14079_high_9 (Length: 311)

Name: NF14079_high_9
Description: NF14079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14079_high_9
NF14079_high_9
[»] chr5 (3 HSPs)
chr5 (8-260)||(28384979-28385231)
chr5 (10-259)||(12540331-12540580)
chr5 (258-293)||(28384915-28384950)
[»] chr7 (1 HSPs)
chr7 (8-204)||(3417809-3418005)
[»] chr2 (3 HSPs)
chr2 (8-245)||(13439859-13440097)
chr2 (8-185)||(13448083-13448260)
chr2 (8-260)||(13454478-13454731)
[»] chr4 (5 HSPs)
chr4 (14-202)||(48960994-48961182)
chr4 (15-190)||(48965044-48965219)
chr4 (11-186)||(48967177-48967352)
chr4 (21-151)||(48957898-48958028)
chr4 (15-140)||(48912634-48912759)
[»] chr8 (1 HSPs)
chr8 (21-204)||(12641776-12641959)
[»] chr6 (1 HSPs)
chr6 (12-152)||(12590455-12590595)


Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 28385231 - 28384979
Alignment:
Q  8 gagcagagataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggct 107  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28385231 gagcagagataacatagagaaggctatgaggaaattgatggacggtggcgatgaagctgaaaatatgagacaacgtgctcgagagttaggagagaaggct 28385132  T
Q  108 acacgagctgttaaagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgattaatcaa 207  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28385131 acacgagctgttaaagaaggtggttcctcttataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgattaatcaa 28385032  T
Q  208 atgaatatggtatgagttttttgaacttatcctaataacgtcgttgtttcgtc 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28385031 atgaatatggtatgagttttttgaacttatcctaataacgtcgttgtttcgtc 28384979  T

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Target: chr5; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 12540580 - 12540331
Alignment:
Q  10 gcagagataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctac 109  Q
    ||||||||  |||||||||||||||||||||||||||||| |||||  ||||||||||| ||||||||| |||||| |||||| | |||||||||||||     
T  12540580 gcagagatggcatagagaaggctatgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctag 12540481  T
Q  110 acgagctgttaaagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgattaatcaaat 209  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||| |||||| |||| ||||||||||||| |||     
T  12540480 acgagctgttcaagaaggtggttcctctcataataatttgttatctttgatcgacgaaattaaaagatttagagactgcaagccacatgattaattaaag 12540381  T
Q  210 gaatatggtatgagttttttgaacttatcctaataacgtcgttgtttcgt 259  Q
    || ||| | ||| ||||| |||| ||||||||||||||||||||||||||    
T  12540380 gagtattgcatgtgttttctgaatttatcctaataacgtcgttgtttcgt 12540331  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 293
Target Start/End: Complemental strand, 28384950 - 28384915
Alignment:
Q  258 gtcgatgaatttctattgaatactagcataaaaatg 293  Q
    ||||||||||||||||||||||||||||||||||||    
T  28384950 gtcgatgaatttctattgaatactagcataaaaatg 28384915  T

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Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 8 - 204
Target Start/End: Original strand, 3417809 - 3418005
Alignment:
Q  8 gagcagagataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggct 107  Q
    |||||||||| ||||||||||||| |||||||||||||||||| || | ||||| ||||||  |||||||| ||||||||||||| | ||||||||||||    
T  3417809 gagcagagatgacatagagaaggcaatgaggagattgatggacagtagtgatgaggctgaaggtatgagactacgtgctcgagagcttggagagaaggct 3417908  T
Q  108 acacgagctgttaaagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgattaat 204  Q
    | ||||||| || |||||||||||||||| ||| ||||||||||| |||| ||||||||||||||||  ||||||||| |||| |||| ||||||||    
T  3417909 aaacgagctattcaagaaggtggttcctcacatcataatttgttaactttgatcgacgaacttaaaaagttgagagactgcaagccacttgattaat 3418005  T

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Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 8 - 245
Target Start/End: Complemental strand, 13440097 - 13439859
Alignment:
Q  8 gagcagagataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggct 107  Q
    |||||| |||||||||||||||||| ||||||||||||||||   ||| ||||||||| || ||||||| | || ||||| |||||| ||||| ||||||    
T  13440097 gagcagggataacatagagaaggctgtgaggagattgatggagaatggtgatgaagctaaaaatatgaggctacttgctcaagagtttggagaaaaggct 13439998  T
Q  108 acacgagctgttaaagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgattaa-tca 206  Q
    |||| |||| || |||||||||| || ||| ||||||||||||| |||||||| || |||||||||||||||||||||  ||| | |||||||||| |||    
T  13439997 acacaagctattcaagaaggtggctcgtcttataataatttgttggctttaattgaagaacttaaaagattgagagaccccaagcgacatgattaattca 13439898  T
Q  207 aatgaatatggtatgagttttttgaacttatcctaataa 245  Q
    || || ||| || |  ||||||| ||| |||||||||||    
T  13439897 aaggactattgtctatgttttttcaacctatcctaataa 13439859  T

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Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 8 - 185
Target Start/End: Complemental strand, 13448260 - 13448083
Alignment:
Q  8 gagcagagataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggct 107  Q
    ||||||||||| ||||||||||||| | |||||||||||||||||||| |||||||||||| |||| || | ||||||||||||||| ||||| || |||    
T  13448260 gagcagagatagcatagagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacgtgctcgagagtttggagaaaaagct 13448161  T
Q  108 acacgagctgttaaagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagac 185  Q
    | || |||| || |||||||||| || ||| ||||||||||||| ||||| || |||||||||||||||| |||||||    
T  13448160 atacaagctattcaagaaggtggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagac 13448083  T

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Target: chr2; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 13454731 - 13454478
Alignment:
Q  8 gagcagagataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggct 107  Q
    ||||| ||||| ||||||||||||| ||||||||||||||| |||||| ||||||||| || |||| ||   ||||||||||||||| ||||| ||||||    
T  13454731 gagcaaagatagcatagagaaggctgtgaggagattgatgggcggtggtgatgaagctaaaaatatcagggtacgtgctcgagagtttggagaaaaggct 13454632  T
Q  108 acacgagctgttaaagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgattaa-tca 206  Q
    |||| |||| || || ||||||| || ||| ||||||||||||| ||||| || || |||||||||||||||||| ||  ||| || ||||||||| |||    
T  13454631 acacaagctattcaaaaaggtggctcatcttataataatttgttggctttgattgatgaacttaaaagattgagaaacctcaagccgcatgattaattca 13454532  T
Q  207 aatgaatatggtatgagttttttgaacttatcctaataacgtcgttgtttcgtc 260  Q
    || ||  || || | |||||||| ||||| | |||||||| | |||||||||||    
T  13454531 aaggagcattgtgtaagttttttcaactttttctaataacattgttgtttcgtc 13454478  T

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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 48961182 - 48960994
Alignment:
Q  14 agataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacga 113  Q
    |||||| |||||||||||  |||| | ||| ||||||||||| |||||||| ||| |||| ||||  |||||||||||||| || || ||||||| | ||    
T  48961182 agataatatagagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctatatga 48961083  T
Q  114 gctgttaaagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgatta 202  Q
    |||||| ||| ||| || || ||||||||||||||||| |||||||| || || |||||||||||||||||||| || |||| ||||||    
T  48961082 gctgttcaagtaggcggctcatctcataataatttgttggctttaattgatgatcttaaaagattgagagacaggaagccacttgatta 48960994  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 48965219 - 48965044
Alignment:
Q  15 gataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgag 114  Q
    |||| ||||||||||||| ||||||||||||||||| |||| |||||||||||  | || |||   ||||||| |||||| ||||| ||||||| |||||    
T  48965219 gatagcatagagaaggctgtgaggagattgatggacagtggtgatgaagctgagaaaattagaagtcgtgctcaagagtttggagaaaaggctagacgag 48965120  T
Q  115 ctgttaaagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaa 190  Q
    |  || |||||||||| || |||||||| ||||||||||| || || || || || |||||||||||||| |||||    
T  48965119 ccattcaagaaggtggctcgtctcataagaatttgttagccttgattgatgatctcaaaagattgagagatagcaa 48965044  T

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Target: chr4; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 11 - 186
Target Start/End: Complemental strand, 48967352 - 48967177
Alignment:
Q  11 cagagataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctaca 110  Q
    |||||||||||||||||| ||||| || ||||||||||||  || ||||||||||||  | || ||||||||||||||||| || ||||| |||||||||    
T  48967352 cagagataacatagagaaagctataagaagattgatggacaatgacgatgaagctgagaagatcagacaacgtgctcgagactttggagaaaaggctaca 48967253  T
Q  111 cgagctgttaaagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagaca 186  Q
    |||||  || |||||||||| |  ||| ||||||||||  | ||||| || || || ||||||||| |||||||||    
T  48967252 cgagcacttcaagaaggtggcttgtcttataataatttacttgctttgattgatgatcttaaaagaatgagagaca 48967177  T

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Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 48958028 - 48957898
Alignment:
Q  21 atagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgtta 120  Q
    ||||| |||||| ||| |||||||||||||||||| |||||||||||  | || | ||| ||||||| |||||| ||||| ||||||||||||||||||     
T  48958028 atagaaaaggctgtgaagagattgatggacggtggtgatgaagctgaggaaatcaaacagcgtgctcaagagttcggagaaaaggctacacgagctgttc 48957929  T
Q  121 aagaaggtggttcctctcataataatttgtt 151  Q
    |||||||||| || |||||||| ||||||||    
T  48957928 aagaaggtggatcatctcataacaatttgtt 48957898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 48912634 - 48912759
Alignment:
Q  15 gataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgag 114  Q
    ||||| || ||||||| | ||| | ||||||||||| |||| |||||||||||  | || ||||||| |||||||||||| || ||||| |||| ||  |    
T  48912634 gataatattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatg 48912733  T
Q  115 ctgttaaagaaggtggttcctctcat 140  Q
    |  |||||||||||||||| ||||||    
T  48912734 caattaaagaaggtggttcatctcat 48912759  T

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Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 21 - 204
Target Start/End: Original strand, 12641776 - 12641959
Alignment:
Q  21 atagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgtta 120  Q
    |||||||| ||| |||||||||||||||||| ||| ||||||||| |  | || ||||||||||||| |||||| ||  | ||||||||||  ||||||     
T  12641776 atagagaaagctgtgaggagattgatggacgatggtgatgaagctaaggaaatcagacaacgtgctcaagagtttgggaaaaaggctacacatgctgttg 12641875  T
Q  121 aagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgattaat 204  Q
    ||||||| || || |||||||| |||||||| ||||| ||  |||| |||||||||| ||||||| ||||||||| ||| ||||    
T  12641876 aagaaggcgggtcgtctcataacaatttgttggctttgattaacgatcttaaaagatcgagagaccgcaaaccacttgaataat 12641959  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 152
Target Start/End: Original strand, 12590455 - 12590595
Alignment:
Q  12 agagataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacac 111  Q
    ||||||| |||| |||| ||| |||| ||||||||||| ||||||  |||||||||  | || |||| ||||  || ||||||||| || || |||| ||    
T  12590455 agagatagcataaagaatgctgtgagaagattgatggatggtggcattgaagctgaggaaatcagacgacgtagtcaagagttaggggaaaaagctagac 12590554  T
Q  112 gagctgttaaagaaggtggttcctctcataataatttgtta 152  Q
     ||||||| || ||||||| |||||| ||||||||||||||    
T  12590555 tagctgttcaacaaggtggctcctctaataataatttgtta 12590595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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