View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14079_low_10 (Length: 311)

Name: NF14079_low_10
Description: NF14079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14079_low_10
NF14079_low_10
[»] chr5 (3 HSPs)
chr5 (8-260)||(28384979-28385231)
chr5 (10-259)||(12540331-12540580)
chr5 (258-293)||(28384915-28384950)
[»] chr7 (1 HSPs)
chr7 (8-204)||(3417809-3418005)
[»] chr2 (3 HSPs)
chr2 (8-245)||(13439859-13440097)
chr2 (8-185)||(13448083-13448260)
chr2 (8-260)||(13454478-13454731)
[»] chr4 (5 HSPs)
chr4 (14-202)||(48960994-48961182)
chr4 (15-190)||(48965044-48965219)
chr4 (11-186)||(48967177-48967352)
chr4 (21-151)||(48957898-48958028)
chr4 (15-140)||(48912634-48912759)
[»] chr8 (1 HSPs)
chr8 (21-204)||(12641776-12641959)
[»] chr6 (1 HSPs)
chr6 (12-152)||(12590455-12590595)


Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 28385231 - 28384979
Alignment:
Q  8 gagcagagataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggct 107  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28385231 gagcagagataacatagagaaggctatgaggaaattgatggacggtggcgatgaagctgaaaatatgagacaacgtgctcgagagttaggagagaaggct 28385132  T
Q  108 acacgagctgttaaagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgattaatcaa 207  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28385131 acacgagctgttaaagaaggtggttcctcttataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgattaatcaa 28385032  T
Q  208 atgaatatggtatgagttttttgaacttatcctaataacgtcgttgtttcgtc 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28385031 atgaatatggtatgagttttttgaacttatcctaataacgtcgttgtttcgtc 28384979  T

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Target: chr5; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 12540580 - 12540331
Alignment:
Q  10 gcagagataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctac 109  Q
    ||||||||  |||||||||||||||||||||||||||||| |||||  ||||||||||| ||||||||| |||||| |||||| | |||||||||||||     
T  12540580 gcagagatggcatagagaaggctatgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctag 12540481  T
Q  110 acgagctgttaaagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgattaatcaaat 209  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||| |||||| |||| ||||||||||||| |||     
T  12540480 acgagctgttcaagaaggtggttcctctcataataatttgttatctttgatcgacgaaattaaaagatttagagactgcaagccacatgattaattaaag 12540381  T
Q  210 gaatatggtatgagttttttgaacttatcctaataacgtcgttgtttcgt 259  Q
    || ||| | ||| ||||| |||| ||||||||||||||||||||||||||    
T  12540380 gagtattgcatgtgttttctgaatttatcctaataacgtcgttgtttcgt 12540331  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 293
Target Start/End: Complemental strand, 28384950 - 28384915
Alignment:
Q  258 gtcgatgaatttctattgaatactagcataaaaatg 293  Q
    ||||||||||||||||||||||||||||||||||||    
T  28384950 gtcgatgaatttctattgaatactagcataaaaatg 28384915  T

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Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 8 - 204
Target Start/End: Original strand, 3417809 - 3418005
Alignment:
Q  8 gagcagagataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggct 107  Q
    |||||||||| ||||||||||||| |||||||||||||||||| || | ||||| ||||||  |||||||| ||||||||||||| | ||||||||||||    
T  3417809 gagcagagatgacatagagaaggcaatgaggagattgatggacagtagtgatgaggctgaaggtatgagactacgtgctcgagagcttggagagaaggct 3417908  T
Q  108 acacgagctgttaaagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgattaat 204  Q
    | ||||||| || |||||||||||||||| ||| ||||||||||| |||| ||||||||||||||||  ||||||||| |||| |||| ||||||||    
T  3417909 aaacgagctattcaagaaggtggttcctcacatcataatttgttaactttgatcgacgaacttaaaaagttgagagactgcaagccacttgattaat 3418005  T

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Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 8 - 245
Target Start/End: Complemental strand, 13440097 - 13439859
Alignment:
Q  8 gagcagagataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggct 107  Q
    |||||| |||||||||||||||||| ||||||||||||||||   ||| ||||||||| || ||||||| | || ||||| |||||| ||||| ||||||    
T  13440097 gagcagggataacatagagaaggctgtgaggagattgatggagaatggtgatgaagctaaaaatatgaggctacttgctcaagagtttggagaaaaggct 13439998  T
Q  108 acacgagctgttaaagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgattaa-tca 206  Q
    |||| |||| || |||||||||| || ||| ||||||||||||| |||||||| || |||||||||||||||||||||  ||| | |||||||||| |||    
T  13439997 acacaagctattcaagaaggtggctcgtcttataataatttgttggctttaattgaagaacttaaaagattgagagaccccaagcgacatgattaattca 13439898  T
Q  207 aatgaatatggtatgagttttttgaacttatcctaataa 245  Q
    || || ||| || |  ||||||| ||| |||||||||||    
T  13439897 aaggactattgtctatgttttttcaacctatcctaataa 13439859  T

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Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 8 - 185
Target Start/End: Complemental strand, 13448260 - 13448083
Alignment:
Q  8 gagcagagataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggct 107  Q
    ||||||||||| ||||||||||||| | |||||||||||||||||||| |||||||||||| |||| || | ||||||||||||||| ||||| || |||    
T  13448260 gagcagagatagcatagagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacgtgctcgagagtttggagaaaaagct 13448161  T
Q  108 acacgagctgttaaagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagac 185  Q
    | || |||| || |||||||||| || ||| ||||||||||||| ||||| || |||||||||||||||| |||||||    
T  13448160 atacaagctattcaagaaggtggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagac 13448083  T

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Target: chr2; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 13454731 - 13454478
Alignment:
Q  8 gagcagagataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggct 107  Q
    ||||| ||||| ||||||||||||| ||||||||||||||| |||||| ||||||||| || |||| ||   ||||||||||||||| ||||| ||||||    
T  13454731 gagcaaagatagcatagagaaggctgtgaggagattgatgggcggtggtgatgaagctaaaaatatcagggtacgtgctcgagagtttggagaaaaggct 13454632  T
Q  108 acacgagctgttaaagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgattaa-tca 206  Q
    |||| |||| || || ||||||| || ||| ||||||||||||| ||||| || || |||||||||||||||||| ||  ||| || ||||||||| |||    
T  13454631 acacaagctattcaaaaaggtggctcatcttataataatttgttggctttgattgatgaacttaaaagattgagaaacctcaagccgcatgattaattca 13454532  T
Q  207 aatgaatatggtatgagttttttgaacttatcctaataacgtcgttgtttcgtc 260  Q
    || ||  || || | |||||||| ||||| | |||||||| | |||||||||||    
T  13454531 aaggagcattgtgtaagttttttcaactttttctaataacattgttgtttcgtc 13454478  T

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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 48961182 - 48960994
Alignment:
Q  14 agataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacga 113  Q
    |||||| |||||||||||  |||| | ||| ||||||||||| |||||||| ||| |||| ||||  |||||||||||||| || || ||||||| | ||    
T  48961182 agataatatagagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctatatga 48961083  T
Q  114 gctgttaaagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgatta 202  Q
    |||||| ||| ||| || || ||||||||||||||||| |||||||| || || |||||||||||||||||||| || |||| ||||||    
T  48961082 gctgttcaagtaggcggctcatctcataataatttgttggctttaattgatgatcttaaaagattgagagacaggaagccacttgatta 48960994  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 48965219 - 48965044
Alignment:
Q  15 gataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgag 114  Q
    |||| ||||||||||||| ||||||||||||||||| |||| |||||||||||  | || |||   ||||||| |||||| ||||| ||||||| |||||    
T  48965219 gatagcatagagaaggctgtgaggagattgatggacagtggtgatgaagctgagaaaattagaagtcgtgctcaagagtttggagaaaaggctagacgag 48965120  T
Q  115 ctgttaaagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaa 190  Q
    |  || |||||||||| || |||||||| ||||||||||| || || || || || |||||||||||||| |||||    
T  48965119 ccattcaagaaggtggctcgtctcataagaatttgttagccttgattgatgatctcaaaagattgagagatagcaa 48965044  T

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Target: chr4; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 11 - 186
Target Start/End: Complemental strand, 48967352 - 48967177
Alignment:
Q  11 cagagataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctaca 110  Q
    |||||||||||||||||| ||||| || ||||||||||||  || ||||||||||||  | || ||||||||||||||||| || ||||| |||||||||    
T  48967352 cagagataacatagagaaagctataagaagattgatggacaatgacgatgaagctgagaagatcagacaacgtgctcgagactttggagaaaaggctaca 48967253  T
Q  111 cgagctgttaaagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagaca 186  Q
    |||||  || |||||||||| |  ||| ||||||||||  | ||||| || || || ||||||||| |||||||||    
T  48967252 cgagcacttcaagaaggtggcttgtcttataataatttacttgctttgattgatgatcttaaaagaatgagagaca 48967177  T

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Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 48958028 - 48957898
Alignment:
Q  21 atagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgtta 120  Q
    ||||| |||||| ||| |||||||||||||||||| |||||||||||  | || | ||| ||||||| |||||| ||||| ||||||||||||||||||     
T  48958028 atagaaaaggctgtgaagagattgatggacggtggtgatgaagctgaggaaatcaaacagcgtgctcaagagttcggagaaaaggctacacgagctgttc 48957929  T
Q  121 aagaaggtggttcctctcataataatttgtt 151  Q
    |||||||||| || |||||||| ||||||||    
T  48957928 aagaaggtggatcatctcataacaatttgtt 48957898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 48912634 - 48912759
Alignment:
Q  15 gataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgag 114  Q
    ||||| || ||||||| | ||| | ||||||||||| |||| |||||||||||  | || ||||||| |||||||||||| || ||||| |||| ||  |    
T  48912634 gataatattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatg 48912733  T
Q  115 ctgttaaagaaggtggttcctctcat 140  Q
    |  |||||||||||||||| ||||||    
T  48912734 caattaaagaaggtggttcatctcat 48912759  T

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Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 21 - 204
Target Start/End: Original strand, 12641776 - 12641959
Alignment:
Q  21 atagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgtta 120  Q
    |||||||| ||| |||||||||||||||||| ||| ||||||||| |  | || ||||||||||||| |||||| ||  | ||||||||||  ||||||     
T  12641776 atagagaaagctgtgaggagattgatggacgatggtgatgaagctaaggaaatcagacaacgtgctcaagagtttgggaaaaaggctacacatgctgttg 12641875  T
Q  121 aagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgattaat 204  Q
    ||||||| || || |||||||| |||||||| ||||| ||  |||| |||||||||| ||||||| ||||||||| ||| ||||    
T  12641876 aagaaggcgggtcgtctcataacaatttgttggctttgattaacgatcttaaaagatcgagagaccgcaaaccacttgaataat 12641959  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 152
Target Start/End: Original strand, 12590455 - 12590595
Alignment:
Q  12 agagataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacac 111  Q
    ||||||| |||| |||| ||| |||| ||||||||||| ||||||  |||||||||  | || |||| ||||  || ||||||||| || || |||| ||    
T  12590455 agagatagcataaagaatgctgtgagaagattgatggatggtggcattgaagctgaggaaatcagacgacgtagtcaagagttaggggaaaaagctagac 12590554  T
Q  112 gagctgttaaagaaggtggttcctctcataataatttgtta 152  Q
     ||||||| || ||||||| |||||| ||||||||||||||    
T  12590555 tagctgttcaacaaggtggctcctctaataataatttgtta 12590595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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