View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14079_low_15 (Length: 237)
Name: NF14079_low_15
Description: NF14079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14079_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4973402 - 4973623
Alignment:
| Q |
1 |
gctacagattgcatcattgtcccgcattaaccataagaattttgttaatctaattggatactgtgaggaagaagaaccattcacaaggatgtttatattt |
100 |
Q |
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| T |
4973402 |
gctacagattgcgtcattgtcccgcattaaccataagaactttgttaatctaattggatactgtgaggaagaagaaccattcacaaggatgtttatattt |
4973501 |
T |
|
| Q |
101 |
gaatatgctccaaatggaagcctatctgagcatctacatggtaatgctttttgttttagttcttacattgctcaaaacatagttttaaattacagttacg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4973502 |
gaatatgctccaaatggaagcctatctgagcatctacatggtaatgctttttgttttagttcttacattgctcaaaacatggttttaaattacagttacg |
4973601 |
T |
|
| Q |
201 |
gtcacgttgcagacttttatat |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
4973602 |
gtcacgttgcagacttttatat |
4973623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4991310 - 4991531
Alignment:
| Q |
1 |
gctacagattgcatcattgtcccgcattaaccataagaattttgttaatctaattggatactgtgaggaagaagaaccattcacaaggatgtttatattt |
100 |
Q |
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|
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4991310 |
gctacagattgcgtcattgtcccgcattaaccataagaactttgttaatctaattggatactgtgaggaagaagaaccattcacaaggatgtttatattt |
4991409 |
T |
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| Q |
101 |
gaatatgctccaaatggaagcctatctgagcatctacatggtaatgctttttgttttagttcttacattgctcaaaacatagttttaaattacagttacg |
200 |
Q |
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| T |
4991410 |
gaatatgctccaaatggaagcctatctgagcatctacatggtaatgctttttgttttagttcttacattgctcaaaacatggttttaaattacagttacg |
4991509 |
T |
|
| Q |
201 |
gtcacgttgcagacttttatat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
4991510 |
gtcacgttgcagacttttatat |
4991531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 144
Target Start/End: Complemental strand, 35832291 - 35832150
Alignment:
| Q |
3 |
tacagattgcatcattgtcccgcattaaccataagaattttgttaatctaattggatactgtgaggaagaagaaccattcacaaggatgtttatatttga |
102 |
Q |
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|||||||||| || ||||||| ||||||||||||| ||| ||||| ||||| |||||||| |||||||||||||||||||||||| | | || || |
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| T |
35832291 |
tacagattgcttctctgtcccgtgttaaccataagaactttaccaatcttattggttactgtgacgaagaagaaccattcacaaggatgatggtgttgga |
35832192 |
T |
|
| Q |
103 |
atatgctccaaatggaagcctatctgagcatctacatggtaa |
144 |
Q |
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| T |
35832191 |
gtatgctccaaatggaagcttattcgagcatctacatggtaa |
35832150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 37747882 - 37747772
Alignment:
| Q |
29 |
aaccataagaattttgttaatctaattggatactgtgaggaagaagaaccattcacaaggatgtttatatttgaatatgctccaaatggaagcctatctg |
128 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||| ||||| |||||||| || ||||| || ||||| | ||||||||||| |||||||||| |||| || |
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| T |
37747882 |
aaccacaagaattttgtcaatcttattggatattgtgaagaagaagagcctttcaccagaatgttggtttttgaatatgccccaaatggaacactatttg |
37747783 |
T |
|
| Q |
129 |
agcatctacat |
139 |
Q |
| |
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||||| ||||| |
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| T |
37747782 |
agcatttacat |
37747772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 144
Target Start/End: Complemental strand, 26492453 - 26492338
Alignment:
| Q |
29 |
aaccataagaattttgttaatctaattggatactgtgaggaagaagaa-ccattcacaaggatgtttatatttgaatatgctccaaatggaagcctatct |
127 |
Q |
| |
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||||| ||||||||||| ||||| ||||| || ||||| || ||| || ||||||||||||||| | | ||||| |||||||| ||||||| || | | |
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| T |
26492453 |
aaccacaagaattttgtgaatcttattggttattgtgaaga-gaataagccattcacaaggatgatggtttttgagtatgctccgaatggaacgctgttt |
26492355 |
T |
|
| Q |
128 |
gagcatctacatggtaa |
144 |
Q |
| |
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|||||||||||| |||| |
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| T |
26492354 |
gagcatctacatagtaa |
26492338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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