View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14079_low_17 (Length: 222)

Name: NF14079_low_17
Description: NF14079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14079_low_17
NF14079_low_17
[»] chr5 (2 HSPs)
chr5 (1-222)||(28385280-28385501)
chr5 (1-222)||(12540631-12540852)
[»] chr7 (1 HSPs)
chr7 (1-222)||(3417539-3417760)
[»] chr2 (3 HSPs)
chr2 (4-222)||(13448312-13448530)
chr2 (4-222)||(13440149-13440367)
chr2 (70-206)||(13454849-13454985)
[»] chr4 (2 HSPs)
chr4 (70-222)||(48958159-48958314)
chr4 (4-222)||(48965278-48965496)


Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 28385280 - 28385501
Alignment:
Q  1 cctacttccactccaattcttcggactgttgttatcaatttctcattgctgaagtgatctgcatgacaaggccacgttatcattggaactcccgcgccaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28385280 cctacttccactccaattcttcggactgttgttatcaatttctcattgctgaagtgatctgcatgacaaggccacgttatcattggaactcccgcgccaa 28385379  T
Q  101 cagcttctacaattgagttccccccgcaatgtgtcagaaatccccccaccgcagggttgctcaatatcagaacttgtggggcccaacccctgattatgaa 200  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28385380 cagcctctacaattgagttccctccgcaatgtgtcagaaatccccccaccgcagggttgctcaatatcagaacttgtggggcccaacccctgattatgaa 28385479  T
Q  201 acccttctttccaatgtttctc 222  Q
    ||||||||||||||||||||||    
T  28385480 acccttctttccaatgtttctc 28385501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 12540631 - 12540852
Alignment:
Q  1 cctacttccactccaattcttcggactgttgttatcaatttctcattgctgaagtgatctgcatgacaaggccacgttatcattggaactcccgcgccaa 100  Q
    |||||||| |||||||||| ||||||   |||||| | |||||| |||   ||||||||| ||||||| |||||||||||||||||||||||||| ||||    
T  12540631 cctacttctactccaattcctcggacctgtgttattagtttctcgttgaataagtgatctccatgacacggccacgttatcattggaactcccgcaccaa 12540730  T
Q  101 cagcttctacaattgagttccccccgcaatgtgtcagaaatccccccaccgcagggttgctcaatatcagaacttgtggggcccaacccctgattatgaa 200  Q
    |||| |||||||||||||| ||||| |||||||||| |||||||||||||||||||| ||||||||||  ||| ||||||||||||||||| || || ||    
T  12540731 cagcctctacaattgagtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaa 12540830  T
Q  201 acccttctttccaatgtttctc 222  Q
    |||||| |||||||||||||||    
T  12540831 acccttttttccaatgtttctc 12540852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 3417760 - 3417539
Alignment:
Q  1 cctacttccactccaattcttcggactgttgttatcaatttctcattgctgaagtgatctgcatgacaaggccacgttatcattggaactcccgcgccaa 100  Q
    ||||||||||||||||||| |||||||  |||||| | ||||||||||   || |||||| ||||||  ||||||||||||||||||||||| || ||||    
T  3417760 cctacttccactccaattcctcggacttgtgttattagtttctcattgaacaattgatctccatgacccggccacgttatcattggaactcctgcaccaa 3417661  T
Q  101 cagcttctacaattgagttccccccgcaatgtgtcagaaatccccccaccgcagggttgctcaatatcagaacttgtggggcccaacccctgattatgaa 200  Q
    |||| || |||| |||||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||| ||||||||||||||||| |  || ||    
T  3417660 cagcctcaacaaatgagttccccccacaatgtgtcataaatccccctaccgcagggtggctcaatatctgaacctgtggggcccaacccctaacgatcaa 3417561  T
Q  201 acccttctttccaatgtttctc 222  Q
    ||||||||||||||||||||||    
T  3417560 acccttctttccaatgtttctc 3417539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 13448312 - 13448530
Alignment:
Q  4 acttccactccaattcttcggactgttgttatcaatttctcattgctgaagtgatctgcatgacaaggccacgttatcattggaactcccgcgccaacag 103  Q
    ||||| |||||||||| ||||| |  |||||||| ||||||||||  ||| |||||| |||||   |||||||||||||||||||||||||| | |||||    
T  13448312 acttcaactccaattcctcggaattgtgttatcagtttctcattgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacag 13448411  T
Q  104 cttctacaattgagttccccccgcaatgtgtcagaaatccccccaccgcagggttgctcaatatcagaacttgtggggcccaacccctgattatgaaacc 203  Q
    | |||||  ||||||||||||||||||| |||| |||||||||||| ||||||| ||||||||||  ||| ||||||||||||||||| || || |||||    
T  13448412 cctctacggttgagttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacc 13448511  T
Q  204 cttctttccaatgtttctc 222  Q
    |||||| || || ||||||    
T  13448512 cttcttcccgatatttctc 13448530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 13440149 - 13440367
Alignment:
Q  4 acttccactccaattcttcggactgttgttatcaatttctcattgctgaagtgatctgcatgacaaggccacgttatcattggaactcccgcgccaacag 103  Q
    |||||||||||||||| ||| | |  ||||| || |||||| |||  ||| |||||| |||||   |||||||||||||||||||||||||| | |||||    
T  13440149 acttccactccaattcctcgaaattgtgttaccagtttctcgttgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacag 13440248  T
Q  104 cttctacaattgagttccccccgcaatgtgtcagaaatccccccaccgcagggttgctcaatatcagaacttgtggggcccaacccctgattatgaaacc 203  Q
      |||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||  ||||||||||||||||||| | || || |||||    
T  13440249 actctacaattgagttccccccgcaatgcgtcataaatccccccaccgcagggtggctcaatatcttaacttgtggggcccaacccttaatgatcaaacc 13440348  T
Q  204 cttctttccaatgtttctc 222  Q
    | || | | ||||||||||    
T  13440349 catcctcctaatgtttctc 13440367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 70 - 206
Target Start/End: Original strand, 13454849 - 13454985
Alignment:
Q  70 ggccacgttatcattggaactcccgcgccaacagcttctacaattgagttccccccgcaatgtgtcagaaatccccccaccgcagggttgctcaatatca 169  Q
    ||||||||||||||||||||||||  || |||||| ||||| |||||||||||||||||||| |||| |||||||||||| |||||||  |||||||||     
T  13454849 ggccacgttatcattggaactcccatgctaacagcctctacgattgagttccccccgcaatgcgtcataaatccccccactgcagggtgactcaatatct 13454948  T
Q  170 gaacttgtggggcccaacccctgattatgaaaccctt 206  Q
     ||||||||||||||||||||| || || ||||||||    
T  13454949 taacttgtggggcccaacccctaatgatcaaaccctt 13454985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 70 - 222
Target Start/End: Original strand, 48958159 - 48958314
Alignment:
Q  70 ggccacgttatcattggaactcccgcgccaacagcttctacaattgagttccccccgcaatgtgtcagaaatccccccaccgcagggttgctcaatatca 169  Q
    |||||||| ||||||||||| ||||||| |||||| || ||| | ||||||| |||||||||||||| |||| | ||||| |||  || |||||  ||||    
T  48958159 ggccacgtgatcattggaacccccgcgctaacagcctccacagtggagttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatca 48958258  T
Q  170 gaacttgtggggcccaacccctgattatgaaacc---cttctttccaatgtttctc 222  Q
     ||||||||||||||| ||||| || || |||||   |||||||||||||||||||    
T  48958259 aaacttgtggggcccaccccctaatgatcaaacctttcttctttccaatgtttctc 48958314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 48965278 - 48965496
Alignment:
Q  4 acttccactccaattcttcggactgttgttatcaatttctcattgctgaagtgatctgcatgacaaggccacgttatcattggaactcccgcgccaacag 103  Q
    |||||||||||||| | ||| |||  |||||||| ||| || |||  ||| || ||| ||||  ||||||| || ||||| ||||| ||||| |||||||    
T  48965278 acttccactccaatccctcgcacttctgttatcagtttttcgttgtagaattgttctccatgtgaaggccatgtaatcatcggaacccccgcaccaacag 48965377  T
Q  104 cttctacaattgagttccccccgcaatgtgtcagaaatccccccaccgcagggttgctcaatatcagaacttgtggggcccaacccctgattatgaaacc 203  Q
    | || ||  | |||||||  || ||||| |||| |||  | ||||| || |||| |||||  |||||||| || || ||||||||||| || || |||||    
T  48965378 cctccactgtggagttccaaccacaatgagtcataaaggcacccacagcggggtggctcagaatcagaacctgcggagcccaacccctaataatcaaacc 48965477  T
Q  204 cttctttccaatgtttctc 222  Q
    |||||||||||||||||||    
T  48965478 cttctttccaatgtttctc 48965496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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