View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14079_low_4 (Length: 455)
Name: NF14079_low_4
Description: NF14079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14079_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 194 - 430
Target Start/End: Original strand, 44515056 - 44515301
Alignment:
| Q |
194 |
ttatcatatattccttgaacctagttacattctgtatttaatctaagggtatgagtatttggggcccattgttcttaatgtagttgtttggaaaatatat |
293 |
Q |
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| T |
44515056 |
ttatcatatattccttgaacctagttacattctgtatttaatctaagggtatgagtatttgggacccattgttcttaatgtagttgtttggaaaatatat |
44515155 |
T |
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| Q |
294 |
ttaatttaagattaggtcaattttgaggaaaaaattatttaaggaggg---------gaggatgtaacaccccacattactatctctataaataattttg |
384 |
Q |
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| T |
44515156 |
ttaatttaagattaggtcaattttgaggacaaaattatttaagggggggggggacccggggatgtaacaccccacattactatctctataaataattttg |
44515255 |
T |
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| Q |
385 |
ataggattaattcttattattattgttgttattattatagaatgat |
430 |
Q |
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| T |
44515256 |
ataggattaattcttattattattgttgttattattatagaatgat |
44515301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 355 - 432
Target Start/End: Original strand, 44509645 - 44509722
Alignment:
| Q |
355 |
cccacattactatctctataaataattttgataggattaattcttattattattgttgttattattatagaatgatac |
432 |
Q |
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| T |
44509645 |
cccacattactatctctataaataactttgataggattaattcttattattattgttgttattattatagaatgatac |
44509722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 9e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 30 - 197
Target Start/End: Original strand, 1140404 - 1140570
Alignment:
| Q |
30 |
ccatctctctctagtgtgaatgtttcttttttaatatcaaaagagaaatacatgtgaaagttagtttgagtcatccttgcaatcttcttctaaaaccagt |
129 |
Q |
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| T |
1140404 |
ccatctctctctagtgtgaatgtttcttttttaatatcaaaagagaaattcatgtgaaagttagtttgagtcatccttgcaatcttctcataaaatcagt |
1140503 |
T |
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| Q |
130 |
tcatttggttgtagtccctgcatccaatcaatgacaaccaaatagtttagaaagaaagaaacagttat |
197 |
Q |
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| T |
1140504 |
tcatttggttgtagtccctgcatccaatcaatgacaaccaaatag-ttataaagaaagaaacatttat |
1140570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 345 - 414
Target Start/End: Original strand, 26505297 - 26505366
Alignment:
| Q |
345 |
gatgtaacaccccacattactatctctataaataattttgataggattaattcttattattattgttgtt |
414 |
Q |
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| T |
26505297 |
gatgtaacatcccatattactatctctataaataattttgataggattaattcttattattattgttgtt |
26505366 |
T |
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