View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14079_low_5 (Length: 426)
Name: NF14079_low_5
Description: NF14079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14079_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 15 - 403
Target Start/End: Complemental strand, 42336157 - 42335769
Alignment:
| Q |
15 |
gagcacagaacagaagacatcagtcctgggattccggacgttagaccagagatgccaaagaccactactcaaagcacaaactcagctctatgtttgacca |
114 |
Q |
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| T |
42336157 |
gagcacagaacagaagacatcagtcctgggattccggacgttagaccagagatgccaaagaccactactcaaagcacaaactcagctctatgtttgacca |
42336058 |
T |
|
| Q |
115 |
aagtaaacaaacttcaattccttactatattgccgttactatcaccatcttcattattattcaacctcaaccataatttgtgtattaactcttaccaact |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42336057 |
aagtaaacaaacttcaattccttactatattgccgttactatcaccatcttcattattattcaacctcaaccataatttgtgtattaactcttaccaact |
42335958 |
T |
|
| Q |
215 |
caacatacataaactgaaatattccttatacgcactcttgtgcttgcttgactcaaaggaagaatcccaactgggaatnnnnnnngtaagaatatggaac |
314 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||| | ||||||||||||| |
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| T |
42335957 |
caacatacataaactgaaatattccttatacacactcttgtgcttgattgactcaaaggaagaatcccaactggtaataaaaaaagcaagaatatggaac |
42335858 |
T |
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| Q |
315 |
cttctacatcttcagaaaagcagccaccaaaaggaagagttttgaaggagaagagagcaaagttttacattattcgaagatgcatagtc |
403 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42335857 |
cttctacatcttcagaaaagcagctaccaaaaggaagagttttgaaggagaagagagcaaagttttacattattcgaagatgcatagtc |
42335769 |
T |
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