View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14079_low_7 (Length: 397)
Name: NF14079_low_7
Description: NF14079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14079_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 364; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 393
Target Start/End: Complemental strand, 3563850 - 3563475
Alignment:
| Q |
18 |
ggcttcaccggagaatgggcccaagtacttgacacggtctggaccgtaccaaggacttccagaaggaacagacttcttggtggttgctttcctcattgta |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3563850 |
ggcttcaccggagaatgggcccaagtacttgacacggtctggaccgtaccaaggacttccagaaggaacagacttcttggtggttgctttcctcattgtg |
3563751 |
T |
|
| Q |
118 |
actcttcccaccccaatgtcttgggtggatggggaaagcttgattgccttccctacaaatgatgaagaagagagagacattgttgaagccgccattttag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3563750 |
actcttcccaccccaatgtcttgggtggatggggaaagcttgattgccttccctacaaatgatgaagaagagagagacattgttgaagccgccattttag |
3563651 |
T |
|
| Q |
218 |
tattttattccttactaagtaaacaaatgaagctcaattggcaatgttgaggatggttgtcaaattaggttatatggctatttatagttggttttcatcg |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3563650 |
tattttattccttactaagtaaacaaatgaagctcaattggcaatgttgaggatggttatcaaattaggttatatggctatttatagttggttttcatcg |
3563551 |
T |
|
| Q |
318 |
agcaaaactaaaggtcaatatcttatgaaatctatatctaagtttctattggtttgtagtatttcctttgcttctc |
393 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3563550 |
agcaaaactaaaggtcaatatcttaggaaatctatatctaagtttctattggtttgtagtatttcctttgcttctc |
3563475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 386
Target Start/End: Complemental strand, 3569498 - 3569130
Alignment:
| Q |
18 |
ggcttcaccggagaatgggcccaagtacttgacacggtctggaccgtaccaaggacttccagaaggaacagacttcttggtggttgctttcctcattgta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||| ||||| |||||||||||||||| |||||||||||| |
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| T |
3569498 |
ggcttcaccggagaatgggcccaagtacttcacacggtctggaccgtaccatgggcttccagacggaacggacttcttggtggttgttttcctcattgtg |
3569399 |
T |
|
| Q |
118 |
actcttcccaccccaatgtcttgggtggatggggaaagcttgattgccttccctacaaatgatgaagaagagagagacattgttgaagccgccattttag |
217 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||| |||||| | | |
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| T |
3569398 |
actcttcccaccccaatgtcttgagtggatggggaaagtttgattgccttcccgacaaatgatgaagaagagagggacattgttgaagcagccattgtgg |
3569299 |
T |
|
| Q |
218 |
tattttattccttactaagtaaacaaatgaagctcaattggcaatgttgaggatggttgtcaaattaggttatatggctatttatagttggttttcatcg |
317 |
Q |
| |
|
|||||| || ||||||||||||| |||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||| |||||| |||||| |
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| T |
3569298 |
tatttttttgcttactaagtaaagtaatgaagctcaattggcaatgttgagaatggttatcaaatttggttatatggctatttatatttggttatcatcg |
3569199 |
T |
|
| Q |
318 |
agcaaaactaaaggtcaatatcttatgaaatctatatctaagtttctattggtttgtagtatttccttt |
386 |
Q |
| |
|
|| ||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
3569198 |
agtaaaactaaaggtctatatcttgtgaaatccatatctaagtttctattggtttgtagtatttccttt |
3569130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 3572544 - 3572318
Alignment:
| Q |
19 |
gcttcaccggagaatgggcccaagtacttgacacggtctggaccgtaccaaggacttccagaaggaacagacttcttggtggttgctttcctcattgtaa |
118 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||| ||||||||| |||| |
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| T |
3572544 |
gcttcaccagagaatggacccaagtacttgacacggtctggaccgtaccatgggcttccagaaggaacattcttcttggtggttgttttcctcatggtaa |
3572445 |
T |
|
| Q |
119 |
ctcttcccaccccaatgtcttgggtggatggggaaagcttgattgccttccctacaaatgatgaagaagagagagacattgttgaagccgccattttagt |
218 |
Q |
| |
|
|||||||| ||| |||| | || || ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
3572444 |
ttcttcccatgacaaggtctggagtagagggggaaagcttgattgccttcccaaccaatgatgaagaagagagagacattgttgaagcagccatggtaga |
3572345 |
T |
|
| Q |
219 |
attttattccttactaagtaaacaaat |
245 |
Q |
| |
|
|||||| | ||||||||||||||||| |
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|
| T |
3572344 |
attttagtgtttactaagtaaacaaat |
3572318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 3585390 - 3585594
Alignment:
| Q |
19 |
gcttcaccggagaatgggcccaagtacttgacacggtctggaccgtaccaaggacttccagaaggaacagacttcttggtggttgctttcctcattgtaa |
118 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||| | |||||||||||| ||| |||||||||||||| ||||||||| || | |
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|
| T |
3585390 |
gcttcaccagagaatggacccaagtacttgacacggtctggaccgtaccactggcttccagaaggagcagtcttcttggtggttgttttcctcatggtga |
3585489 |
T |
|
| Q |
119 |
ctcttcccaccccaatgtcttgggtggatggggaaagcttgattgccttccctacaaatgatgaagaagagagagacattgttgaagccgccattttagt |
218 |
Q |
| |
|
|||||||| | ||| |||| | || || |||||||||||||||||||| || || | ||||||||| ||||||| |||||||||||| |||||| |||| |
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|
| T |
3585490 |
ttcttcccatcacaaggtctggagtcgaaggggaaagcttgattgcctttccaaccattgatgaagatgagagagccattgttgaagcagccattgtagt |
3585589 |
T |
|
| Q |
219 |
atttt |
223 |
Q |
| |
|
||||| |
|
|
| T |
3585590 |
atttt |
3585594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 3575828 - 3575621
Alignment:
| Q |
19 |
gcttcaccggagaatgggcccaagtacttgacacggtctggaccgtaccaaggacttccagaaggaacagacttcttggtggttgctttcctcattgtaa |
118 |
Q |
| |
|
|||||||| |||||||| |||||||| |||||||| |||||||||||||| || ||||||||||| || ||||||| |||||| ||||||||| || | |
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| T |
3575828 |
gcttcaccagagaatggacccaagtatttgacacgatctggaccgtaccacgggcttccagaagggacgttcttcttgttggttgttttcctcatggtga |
3575729 |
T |
|
| Q |
119 |
ctcttcccaccccaatgtcttgggtggatggggaaagcttgattgccttccctacaaatgatgaagaagagagagacattgttgaagccgccattttagt |
218 |
Q |
| |
|
|||||||| | ||| |||| | ||||| ||||||||||||||||||||||| || | || |||||||||||||| ||||||||| | |||||| |||| |
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|
| T |
3575728 |
ttcttcccatcacaaggtctggagtggaaggggaaagcttgattgccttcccaaccattgttgaagaagagagagccattgttgatgtagccattctagt |
3575629 |
T |
|
| Q |
219 |
attttatt |
226 |
Q |
| |
|
|||||||| |
|
|
| T |
3575628 |
attttatt |
3575621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 29 - 213
Target Start/End: Complemental strand, 13275767 - 13275587
Alignment:
| Q |
29 |
agaatgggcccaagtacttgacacggtctggaccgtaccaaggacttccagaaggaacagacttcttggtggttgctttcctcattgtaactcttcccac |
128 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||| |||||||| |||| ||| ||||| ||||||| ||| |||| || || ||||| | |
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| T |
13275767 |
agaatgggcccaggtacttgacacggtctggaccataccatggacttcctgaagaaact---ttctttgtggttgttttt-tcatggtgacccttccaat |
13275672 |
T |
|
| Q |
129 |
cccaatgtcttgggtggatggggaaagcttgattgccttccctacaaatgatgaagaagagagagacattgttgaagccgccatt |
213 |
Q |
| |
|
|||| ||||||||| || ||| ||| ||||||||||| || || ||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
13275671 |
accaaggtcttgggtagaggggttaagtttgattgcctttccaaccaatgatgaagaagagagagacattgttgaggcagccatt |
13275587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 373
Target Start/End: Complemental strand, 3575520 - 3575457
Alignment:
| Q |
311 |
ttcatcgagcaaaactaaaggtcaatatcttatgaaatctatatc-taagtttctattggtttg |
373 |
Q |
| |
|
|||||| || ||||||| ||||| ||||||||||||||||||||| | | |||||||||||||| |
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|
| T |
3575520 |
ttcatcaagaaaaactagaggtccatatcttatgaaatctatatcttgattttctattggtttg |
3575457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 38356861 - 38356806
Alignment:
| Q |
22 |
tcaccggagaatgggcccaagtacttgacacggtctggaccgtaccaaggacttcc |
77 |
Q |
| |
|
||||| ||||||||||| |||||||| ||||||||||| |||||||| || ||||| |
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|
| T |
38356861 |
tcaccagagaatgggcctaagtacttaacacggtctgggccgtaccatgggcttcc |
38356806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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