View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14079_low_8 (Length: 364)
Name: NF14079_low_8
Description: NF14079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14079_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 23 - 347
Target Start/End: Original strand, 49364024 - 49364348
Alignment:
| Q |
23 |
cctcggcatgaggttggccgggtttaggatgaaaaccttgaccaacaatattttcatgtttgacaataacacatccaactaatggattgggactggtata |
122 |
Q |
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| T |
49364024 |
cctcggcatgaggttggccgggtttaggatgaaaaccttgaccaacaatatttccatgtttgacaataacacatccaactaatggattgggactggtata |
49364123 |
T |
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| Q |
123 |
ccccaaaccttttctagctagctcaacactttttctcatataaaatccatcatcattatcttgatgatgattgttttgagcacgaacaacatagctgtta |
222 |
Q |
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| T |
49364124 |
ccccaaaccttttctagctagctcaacactttttctcatataaaatccatcatcattatcttgatgatgattgttttgagcacgaacaacatagctgtta |
49364223 |
T |
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| Q |
223 |
cttttcgaagagtgtgtgtgtataataagtggtttggaaaaggcagaattaaaattggaggggatgggaatgaacaagggtggatgaggagaagaagcat |
322 |
Q |
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| T |
49364224 |
cttttcggagagtgtgtgtgtataataagtggtttggaaaaggcagaattaaaattggaggggatgggaatgaacaagggtggatgaggagaagaagcat |
49364323 |
T |
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| Q |
323 |
tgattgagcatttggaattgcaaca |
347 |
Q |
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| T |
49364324 |
tgattgagcatttggaattgcaaca |
49364348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 196 - 306
Target Start/End: Original strand, 1560589 - 1560699
Alignment:
| Q |
196 |
ttttgagcacgaacaacatagctgttacttttcgaagagtgtgtgtgtataataagtggtttggaaaaggcagaattaaaattggaggggatgggaatga |
295 |
Q |
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| T |
1560589 |
ttttgagcacgaacaacatagtcgttattctttcaagagtgtctatacataataagtggtttggaaaaggcataattaaaattggaggggctgcgaatga |
1560688 |
T |
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| Q |
296 |
acaagggtgga |
306 |
Q |
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| T |
1560689 |
acgaaggtgga |
1560699 |
T |
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