View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14079_low_9 (Length: 312)
Name: NF14079_low_9
Description: NF14079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14079_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 166; Significance: 7e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 128 - 297
Target Start/End: Original strand, 27898170 - 27898339
Alignment:
| Q |
128 |
gaatcttaaatatcatcaagaaacaagtcattttcactctcaaagaacccataaatagacggatcattatgttaattttcttttggttaatgggagaagt |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27898170 |
gaatcttaaatatcatcaagaaacaagtcattttcactctcaaagaacccataaatagacggatcattatgttaattttcttttggttaatgggagaagt |
27898269 |
T |
|
| Q |
228 |
tgaaatttttgcatcataatacaatccgttgttgaatatgaatttagcttgataaacgtacacgtaattt |
297 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27898270 |
tgaaatttttgcatcataatacaatccattgttgaatatgaatttagcttgataaacgtacacgtaattt |
27898339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 27898043 - 27898080
Alignment:
| Q |
1 |
ttattaatattcttcacgttcaagatgtttcccttgtc |
38 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
27898043 |
ttattaatattcttcacgttcaagatgtttcacttgtc |
27898080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University