View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1407_low_12 (Length: 329)
Name: NF1407_low_12
Description: NF1407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1407_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 57 - 322
Target Start/End: Complemental strand, 1264342 - 1264088
Alignment:
| Q |
57 |
actgagttggccaaattgaacaaagatgtcctcaaagattctatttgcgctctatttgttagaatctcccccatcaatgccggatcgacttgctccaagt |
156 |
Q |
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| T |
1264342 |
actgagttggccaaattgaacaaagatgtcctcaaagattctatttg-----------ttagaatctcccccatcaatgccggatcgacttgctccaagt |
1264254 |
T |
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| Q |
157 |
catctgtaatgggcgaggagaagcatcgactttgccttaaatccttcatgttatgcataatcnnnnnnntgggttcaaatataatatagcaaaacaatat |
256 |
Q |
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| T |
1264253 |
catctgtaatgggcgaggagaagcatcgactttgcctcaaatccttcatgttatgcataataaaaaaaatgggttcaaatataatatagcaaaacaatat |
1264154 |
T |
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| Q |
257 |
gagcattttaaaaataatattacaataagaattacctgagagttactcgagttctcgcctatgata |
322 |
Q |
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| T |
1264153 |
gagcattttaaaaataatattacaataagaattacttgagagttactcgagttctcgtctatgata |
1264088 |
T |
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