View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1407_low_3 (Length: 574)

Name: NF1407_low_3
Description: NF1407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1407_low_3
NF1407_low_3
[»] chr5 (6 HSPs)
chr5 (81-452)||(20478341-20478711)
chr5 (203-289)||(14011409-14011496)
chr5 (131-251)||(8920101-8920220)
chr5 (223-285)||(42509720-42509782)
chr5 (227-288)||(31748454-31748515)
chr5 (131-215)||(21922110-21922193)
[»] scaffold0085 (1 HSPs)
scaffold0085 (199-292)||(22742-22835)
[»] chr6 (6 HSPs)
chr6 (185-290)||(21418248-21418353)
chr6 (203-290)||(21467933-21468020)
chr6 (131-269)||(34441975-34442111)
chr6 (202-289)||(21388309-21388396)
chr6 (222-254)||(21418410-21418442)
chr6 (222-254)||(21468093-21468125)
[»] scaffold0160 (1 HSPs)
scaffold0160 (187-274)||(26499-26586)
[»] chr4 (6 HSPs)
chr4 (199-272)||(1840668-1840741)
chr4 (227-289)||(39158223-39158285)
chr4 (131-287)||(42062525-42062680)
chr4 (199-289)||(18316027-18316117)
chr4 (200-249)||(7209375-7209424)
chr4 (146-218)||(31641528-31641599)
[»] chr7 (6 HSPs)
chr7 (201-289)||(49103480-49103568)
chr7 (199-289)||(28249461-28249551)
chr7 (224-289)||(31487306-31487371)
chr7 (131-243)||(47448849-47448960)
chr7 (146-186)||(2469729-2469769)
chr7 (91-127)||(10614399-10614435)
[»] chr2 (7 HSPs)
chr2 (199-285)||(1040307-1040391)
chr2 (146-289)||(6511448-6511590)
chr2 (131-249)||(9194452-9194570)
chr2 (146-251)||(6646861-6646965)
chr2 (199-251)||(40443139-40443191)
chr2 (199-251)||(40504316-40504368)
chr2 (199-251)||(44018330-44018382)
[»] chr8 (5 HSPs)
chr8 (150-289)||(35153057-35153197)
chr8 (169-254)||(7612921-7613005)
chr8 (131-251)||(3946263-3946382)
chr8 (204-262)||(5849486-5849544)
chr8 (147-251)||(37657028-37657131)
[»] chr1 (3 HSPs)
chr1 (227-289)||(47642498-47642560)
chr1 (207-253)||(45008091-45008137)
chr1 (146-251)||(45065831-45065935)
[»] chr3 (4 HSPs)
chr3 (199-262)||(34307459-34307522)
chr3 (199-289)||(4494128-4494218)
chr3 (199-251)||(48346916-48346968)
chr3 (91-127)||(51764729-51764765)
[»] scaffold0034 (1 HSPs)
scaffold0034 (225-286)||(22694-22755)


Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-175; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 81 - 452
Target Start/End: Original strand, 20478341 - 20478711
Alignment:
Q  81 aatatatatgttttttaaatgtcaagttacaaatgtgcattaactcaaccttttatgacaacctctgtgacaactttctctctcacagtcactttgtatt 180  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  20478341 aatatattttttttttaaatgtcaagttacaaatgtgcattaactcaaccttttatgacaacctctgtgacaactttctctctcataatcactttgtatt 20478440  T
Q  181 cttatttttctttcttcgttgctttggtttttgtgtcagtcattacatttctttgtatattttggttgtccaatgagttgtctcaaaaagtggtttttcg 280  Q
    |||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  20478441 cttacttt-ctttcttcattgctttggtttttgtgtcagtcattacatttctttgtatattttggttgtccaataagttgtttcaaaaagtggtttttcg 20478539  T
Q  281 aataacatttctttttaaatcattagcctgtgaatgacaattcccttaataatattgtgatagttttatataatctacactgtaatgcaaacagttggtt 380  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20478540 aataacatttcgttttaactcattagcctgtgaatgacaattcccttaataatattgtgatagttttatataatctacactgtaatgcaaacagttggtt 20478639  T
Q  381 gcagtgttgttaaatggtggcgccatggcgagaatgcggttatttaacaaccgcaactgccatagacagttg 452  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  20478640 gcagtgttgttaaatggtggcaccatggcgggaatgcggttatttaacaaccgcaactgccataaacagttg 20478711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 289
Target Start/End: Original strand, 14011409 - 14011496
Alignment:
Q  203 tttggtttttgtgtcagtcattacatttctttgtatattttggtt-gtccaatgagttgtctcaaaaagtggtttttcgaataacatt 289  Q
    |||||||||||||||| || ||| |||| |||||||||||||||| ||| || |||||||||  |||||||||| ||| |||||||||    
T  14011409 tttggtttttgtgtcaatctttatatttttttgtatattttggttggtcaaaagagttgtcttcaaaagtggttgttcaaataacatt 14011496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 251
Target Start/End: Original strand, 8920101 - 8920220
Alignment:
Q  131 ttttatgacaacctctgtgacaactttctctctcacagtcactttgtattcttatttttctttcttcgttgctttggtttttgtgtcagtcattacattt 230  Q
    |||| ||||||| | |||||||||||||||||||| | |||| |  |||||| | |||||| |||   ||||||||||||||||| ||    | ||||||    
T  8920101 ttttgtgacaacttttgtgacaactttctctctcatactcacatcatattctca-ttttctctctctattgctttggtttttgtgccaagactcacattt 8920199  T
Q  231 ctttgtatattttggttgtcc 251  Q
    |||| ||||||||||||||||    
T  8920200 ctttctatattttggttgtcc 8920220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 223 - 285
Target Start/End: Original strand, 42509720 - 42509782
Alignment:
Q  223 ttacatttctttgtatattttggttgtccaatgagttgtctcaaaaagtggtttttcgaataa 285  Q
    ||||||||||||| |||||||||||||| ||| |||| |||||| ||||| || ||| |||||    
T  42509720 ttacatttctttgcatattttggttgtctaataagttctctcaacaagtgattgttcaaataa 42509782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 31748454 - 31748515
Alignment:
Q  227 atttctttgtatattttggttgtccaatgagttgtctcaaaaagtggtttttcgaataacat 288  Q
    ||||||||||||| |||| ||||||||| ||||||| |||||| || || ||| ||||||||    
T  31748454 atttctttgtataatttgattgtccaataagttgtcacaaaaaatgattgttcaaataacat 31748515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 21922193 - 21922110
Alignment:
Q  131 ttttatgacaacctctgtgacaactttctctctcacagtcactttgtattcttatttttctttcttcgttgctttggtttttgtg 215  Q
    |||| ||||||| | |||||||||||||||||||| | |||| |  |||||||| |||||| |||   |||||||||||||||||    
T  21922193 ttttgtgacaacgtttgtgacaactttctctctcatactcacatcatattctta-ttttctctctctattgctttggtttttgtg 21922110  T

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Target: scaffold0085 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 199 - 292
Target Start/End: Complemental strand, 22835 - 22742
Alignment:
Q  199 ttgctttggtttttgtgtcagtcattacatttctttgtatattttggttgtccaatgagttgtctcaaaaagtggtttttcgaataacatttct 292  Q
    |||||||||||||||||||| ||  |||||||||||||||| |||||||||||||| |||||||| ||||||| ||| ||| ||||||||||||    
T  22835 ttgctttggtttttgtgtcaatcgatacatttctttgtatactttggttgtccaattagttgtctgaaaaagttgttgttcaaataacatttct 22742  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 185 - 290
Target Start/End: Complemental strand, 21418353 - 21418248
Alignment:
Q  185 tttttctttcttcgttgctttggtttttgtgtcagtcattacatttctttgtatattttggttgtccaatgagttgtctcaaaaagtggtttttcgaata 284  Q
    ||||||| | ||| ||| |||||||||||||||| || ||||||||||||||||||||||||| |||||| | || | | ||||||||||| ||| ||||    
T  21418353 tttttctcttttcattgttttggtttttgtgtcaatccttacatttctttgtatattttggttatccaataaattattttaaaaagtggttattcaaata 21418254  T
Q  285 acattt 290  Q
    ||||||    
T  21418253 acattt 21418248  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 203 - 290
Target Start/End: Complemental strand, 21468020 - 21467933
Alignment:
Q  203 tttggtttttgtgtcagtcattacatttctttgtatattttggttgtccaatgagttgtctcaaaaagtggtttttcgaataacattt 290  Q
    ||||||||||| |||| || |||||||||||||||||||||||||||||||| | || | | |||||||| || ||| ||||||||||    
T  21468020 tttggtttttgagtcaatccttacatttctttgtatattttggttgtccaataaattattttaaaaagtgattattcaaataacattt 21467933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 269
Target Start/End: Complemental strand, 34442111 - 34441975
Alignment:
Q  131 ttttatgacaacctctgtgacaactttctctctcacagtcactttgtattcttatttttctttcttcgttgctttggtttttgtgtcagtcattacattt 230  Q
    |||||||||||| | |||||||| ||||||||||| | |||| ||||||| |  ||| | | ||  | ||||||||||||||||| |  || ||||||||    
T  34442111 ttttatgacaacttttgtgacaattttctctctcatactcacattgtattatactttatatctc--cattgctttggtttttgtgacgatccttacattt 34442014  T
Q  231 ctttgtatattttggttgtccaatgagttgtctcaaaaa 269  Q
    |||| || |||||| ||||||||| |||||||| |||||    
T  34442013 ctttatacattttgattgtccaataagttgtcttaaaaa 34441975  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 202 - 289
Target Start/End: Complemental strand, 21388396 - 21388309
Alignment:
Q  202 ctttggtttttgtgtcagtcattacatttctttgtatattttggttgtccaatgagttgtctcaaaaagtggtttttcgaataacatt 289  Q
    ||||| ||||||||||| || |||||||||||| ||||||||| |||| |||| | || | | ||||||||||| ||| |||||||||    
T  21388396 ctttgatttttgtgtcaatccttacatttctttatatattttgattgtgcaataaattattttaaaaagtggttgttcaaataacatt 21388309  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 254
Target Start/End: Complemental strand, 21418442 - 21418410
Alignment:
Q  222 attacatttctttgtatattttggttgtccaat 254  Q
    |||||||||||||||||||||||||||||||||    
T  21418442 attacatttctttgtatattttggttgtccaat 21418410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 254
Target Start/End: Complemental strand, 21468125 - 21468093
Alignment:
Q  222 attacatttctttgtatattttggttgtccaat 254  Q
    |||||||||||||||||||||||||||||||||    
T  21468125 attacatttctttgtatattttggttgtccaat 21468093  T

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Target: scaffold0160 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 187 - 274
Target Start/End: Original strand, 26499 - 26586
Alignment:
Q  187 tttctttcttcgttgctttggtttttgtgtcagtcattacatttctttgtatattttggttgtccaatgagttgtctcaaaaagtggt 274  Q
    ||||| ||||| ||| |||| ||||| ||||| || |||||||| |||||||||||||||| |||||| |||||||| ||||||||||    
T  26499 tttctctcttcattgttttgatttttatgtcaatccttacatttgtttgtatattttggttatccaataagttgtctaaaaaagtggt 26586  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 199 - 272
Target Start/End: Original strand, 1840668 - 1840741
Alignment:
Q  199 ttgctttggtttttgtgtcagtcattacatttctttgtatattttggttgtccaatgagttgtctcaaaaagtg 272  Q
    |||||||| ||||||||||| || ||||||||||||| |||||||| ||||| ||| || ||||||||||||||    
T  1840668 ttgctttgatttttgtgtcaatccttacatttctttgcatattttgattgtctaataagatgtctcaaaaagtg 1840741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 289
Target Start/End: Original strand, 39158223 - 39158285
Alignment:
Q  227 atttctttgtatattttggttgtccaatgagttgtctcaaaaagtggtttttcgaataacatt 289  Q
    ||||||||||||| |||||||||||||| ||||||| ||| || ||||| ||| |||||||||    
T  39158223 atttctttgtataatttggttgtccaataagttgtcacaataaatggttgttcaaataacatt 39158285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 131 - 287
Target Start/End: Complemental strand, 42062680 - 42062525
Alignment:
Q  131 ttttatgacaacctctgtgacaactttctctctcacagtcactttgtattcttatttttctttcttcgttgctttggtttttgtgtc-agtcattacatt 229  Q
    |||||||||||| | | |||||||||| ||||||| | | || || |||| | ||||| || ||||| |||||||| |||||||| | || | | |||||    
T  42062680 ttttatgacaacttttatgacaactttttctctcatacttacattatattttcatttt-ctctcttcattgctttgatttttgtgcctagac-tcacatt 42062583  T
Q  230 tctttgtatattttggttgtccaatgagttgtctcaaaaagtggtttttcgaataaca 287  Q
    |||||||||||||||||||||| |  ||||||| || ||| ||||| ||| |||||||    
T  42062582 tctttgtatattttggttgtcccacaagttgtcccataaaatggttgttcaaataaca 42062525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 289
Target Start/End: Original strand, 18316027 - 18316117
Alignment:
Q  199 ttgctttggtttttgtgtcagtcattacatttctttgtatattttggttgtccaatgagttgtctcaaaaagtggtttttcgaataacatt 289  Q
    |||||||| ||||||||||| |   || ||||||||||||| |||||||||||||  |||||||  || || ||||| ||| |||||||||    
T  18316027 ttgctttgatttttgtgtcactacctaaatttctttgtataatttggttgtccaacaagttgtcataagaaatggttgttcaaataacatt 18316117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 7209375 - 7209424
Alignment:
Q  200 tgctttggtttttgtgtcagtcattacatttctttgtatattttggttgt 249  Q
    |||||||||||||||| ||    |||||||||||||||||||||||||||    
T  7209375 tgctttggtttttgtggcaaaacttacatttctttgtatattttggttgt 7209424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 31641599 - 31641528
Alignment:
Q  146 tgtgacaactttctctctcacagtcactttgtattcttatttttctttcttcgttgctttggtttttgtgtca 218  Q
    |||||||||||||||||||||| |||| || |||| |||  ||||| ||| | |||||||| |||||||||||    
T  31641599 tgtgacaactttctctctcacactcacattatattttta-ctttctgtctccattgctttgatttttgtgtca 31641528  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 201 - 289
Target Start/End: Complemental strand, 49103568 - 49103480
Alignment:
Q  201 gctttggtttttgtgtca-gtcattacatttctttgtatattttggttgtccaatgagttgtctcaaaaagtggtttttcgaataacatt 289  Q
    |||||||||||||||||| | ||| ||||||||||||||||||||||||||| |  ||||||||||  || ||||| ||| |||||||||    
T  49103568 gctttggtttttgtgtcaagacat-acatttctttgtatattttggttgtcccacaagttgtctcatgaaatggttattcaaataacatt 49103480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 289
Target Start/End: Complemental strand, 28249551 - 28249461
Alignment:
Q  199 ttgctttggtttttgtgtcagtcattacatttctttgtatattttggttgtccaatgagttgtctcaaaaagtggtttttcgaataacatt 289  Q
    |||||||| ||||||||||| |  ||| ||||||||||||| ||| |||||||||  ||||||| ||| || ||||| ||| |||||||||    
T  28249551 ttgctttgatttttgtgtcactacttaaatttctttgtataatttagttgtccaaaaagttgtcacaagaaatggttgttcaaataacatt 28249461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 31487306 - 31487371
Alignment:
Q  224 tacatttctttgtatattttggttgtccaatgagttgtctcaaaaagtggtttttcgaataacatt 289  Q
    |||||||||||||| ||||||||||| | || ||||||| || ||||||||| ||| |||||||||    
T  31487306 tacatttctttgtaaattttggttgttccataagttgtcacataaagtggttgttcaaataacatt 31487371  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 243
Target Start/End: Original strand, 47448849 - 47448960
Alignment:
Q  131 ttttatgacaacctctgtgacaactttctctctcacagtcactttgtattcttatttttctttcttcgttgctttggtttttgtgtcagtcattacattt 230  Q
    |||| ||||||| | |||||||||||||||||||| | |||| |||| || |||  |||||||||   ||||||||||||||||| || |   || ||||    
T  47448849 ttttttgacaacttttgtgacaactttctctctcatactcacattgtgttttta-ctttctttctctattgctttggtttttgtgccactacctaaattt 47448947  T
Q  231 ctttgtatatttt 243  Q
    |||||||||||||    
T  47448948 ctttgtatatttt 47448960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 2469729 - 2469769
Alignment:
Q  146 tgtgacaactttctctctcacagtcactttgtattcttatt 186  Q
    |||||||||||||||||||| | |||| |||||||||||||    
T  2469729 tgtgacaactttctctctcatactcacattgtattcttatt 2469769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 10614435 - 10614399
Alignment:
Q  91 ttttttaaatgtcaagttacaaatgtgcattaactca 127  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  10614435 ttttttaaatgtcaacttacaaatgtgcatttactca 10614399  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 199 - 285
Target Start/End: Complemental strand, 1040391 - 1040307
Alignment:
Q  199 ttgctttggtttttgtgtcagtcattacatttctttgtatattttggttgtccaatgagttgtctcaaaaagtggtttttcgaataa 285  Q
    ||||||||||||||||||| |||  || ||||||||||||||||||||||| | |  |||||| |||||||||| || ||| |||||    
T  1040391 ttgctttggtttttgtgtctgtc--tatatttctttgtatattttggttgttccaaaagttgtatcaaaaagtgattgttcaaataa 1040307  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 289
Target Start/End: Complemental strand, 6511590 - 6511448
Alignment:
Q  146 tgtgacaactttctctctcacagtcactttgtattcttatttttctttcttcgttgctttggtttttgtgtcagtcattacatttctttgtatattttgg 245  Q
    |||||||| ||||||||||| | | || || |||||| ||||| || |||   ||||||||||||||||||||    | |||||||||| ||||||||||    
T  6511590 tgtgacaattttctctctcatatttacattatattctcatttt-ctctctctattgctttggtttttgtgtcaagactcacatttctttctatattttgg 6511492  T
Q  246 ttgtccaatgagttgtctcaaaaagtggtttttcgaataacatt 289  Q
    |||||| |  |||||||  | ||| ||||| ||| |||||||||    
T  6511491 ttgtcccacaagttgtcctacaaaatggttgttcaaataacatt 6511448  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 249
Target Start/End: Original strand, 9194452 - 9194570
Alignment:
Q  131 ttttatgacaacctctgtgacaactttctctctcacagtcactttgtattcttatttttctttcttcgttgctttggtttttgtgtc-agtcattacatt 229  Q
    |||| ||||||| | | |||||||||||||||||| | |||| || |||| | ||||| || ||| | ||||||||||||||||| | || | | ||| |    
T  9194452 ttttgtgacaacttttatgacaactttctctctcatactcacattatattttcatttt-ctctctccattgctttggtttttgtgcctagacctcacaat 9194550  T
Q  230 tctttgtatattttggttgt 249  Q
    ||||||||||||||||||||    
T  9194551 tctttgtatattttggttgt 9194570  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 251
Target Start/End: Original strand, 6646861 - 6646965
Alignment:
Q  146 tgtgacaactttctctctcacagtcactttgtattcttatttttctttcttcgttgctttggtttttgtgtcagtcattacatttctttgtatattttgg 245  Q
    |||||||||||||||||||| | |||| |  |||||| ||||| || |||   ||||||||||||||||| ||    | |||||||||| ||||||||||    
T  6646861 tgtgacaactttctctctcatactcacatcatattctcatttt-ctctctctattgctttggtttttgtgccaagactcacatttctttctatattttgg 6646959  T
Q  246 ttgtcc 251  Q
    ||||||    
T  6646960 ttgtcc 6646965  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 40443139 - 40443191
Alignment:
Q  199 ttgctttggtttttgtgtcagtcattacatttctttgtatattttggttgtcc 251  Q
    |||||||||||||||||||  |  | |||||||||| ||||||||||||||||    
T  40443139 ttgctttggtttttgtgtcgatactaacatttctttatatattttggttgtcc 40443191  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 40504316 - 40504368
Alignment:
Q  199 ttgctttggtttttgtgtcagtcattacatttctttgtatattttggttgtcc 251  Q
    |||||||| ||||||||||| |  | |||||||||| ||||||||||||||||    
T  40504316 ttgctttgatttttgtgtcaatactaacatttctttatatattttggttgtcc 40504368  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 44018330 - 44018382
Alignment:
Q  199 ttgctttggtttttgtgtcagtcattacatttctttgtatattttggttgtcc 251  Q
    ||||||||||||||||||||     ||||||||| ||||||||||||||||||    
T  44018330 ttgctttggtttttgtgtcaaaacatacatttctatgtatattttggttgtcc 44018382  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 289
Target Start/End: Original strand, 35153057 - 35153197
Alignment:
Q  150 acaactttctctctcacagtcactttgtattcttatttttctttcttcgttgctttggtttttgtgtcagtcattacatttctttgtata--ttttggtt 247  Q
    |||||||| | ||||| | |||| ||||||||||| ||| || ||| ||||| |||| ||||| ||||| || ||||| |||||| ||||  ||||||||    
T  35153057 acaactttttatctcatactcacgttgtattcttacttt-ctctctccgttgatttgatttttatgtcaatctttacacttctttatatatattttggtt 35153155  T
Q  248 gtccaatgagttgtctcaaaaagtggtttttcgaataacatt 289  Q
    || |||| | |||||| ||||| ||||| ||| |||||||||    
T  35153156 gttcaataacttgtctaaaaaaatggttgttcaaataacatt 35153197  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 169 - 254
Target Start/End: Complemental strand, 7613005 - 7612921
Alignment:
Q  169 tcactttgtattcttatttttctttcttcgttgctttggtttttgtgtcagtcattacatttctttgtatattttggttgtccaat 254  Q
    |||| ||||||||||| ||| ||||||  |||| ||| |||||| | ||| || |||| |||||||||||||||||||||||||||    
T  7613005 tcacattgtattcttacttt-ctttctctgttgttttagtttttctctcaatccttacgtttctttgtatattttggttgtccaat 7612921  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 251
Target Start/End: Original strand, 3946263 - 3946382
Alignment:
Q  131 ttttatgacaacctctgtgacaactttctctctcacagtcactttgtattcttatttttctttcttcgttgctttggtttttgtgtcagtcattacattt 230  Q
    |||| ||||||| | |||||||||||||||||||| | |||| |  |||||| | |||||| |||   ||||||||||||||||| ||    | ||||||    
T  3946263 ttttgtgacaacttttgtgacaactttctctctcatactcacatcatattctca-ttttctctctctattgctttggtttttgtgccaagactcacattt 3946361  T
Q  231 ctttgtatattttggttgtcc 251  Q
    |||| ||||||||||||||||    
T  3946362 ctttctatattttggttgtcc 3946382  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 204 - 262
Target Start/End: Complemental strand, 5849544 - 5849486
Alignment:
Q  204 ttggtttttgtgtcagtcattacatttctttgtatattttggttgtccaatgagttgtc 262  Q
    ||||||||||||||| |  ||| | |||||||||||||||| ||||||||| |||||||    
T  5849544 ttggtttttgtgtcaatgcttaaacttctttgtatattttgattgtccaataagttgtc 5849486  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 147 - 251
Target Start/End: Original strand, 37657028 - 37657131
Alignment:
Q  147 gtgacaactttctctctcacagtcactttgtattcttatttttctttcttcgttgctttggtttttgtgtcagtcattacatttctttgtatattttggt 246  Q
    ||||||||||||||||||| | |||| |  |||||| | |||||| |||  |||||||||||||||||| ||    | |||||||||  |||||||||||    
T  37657028 gtgacaactttctctctcatactcacatcatattctca-ttttctctctctgttgctttggtttttgtgccaagactcacatttcttactatattttggt 37657126  T
Q  247 tgtcc 251  Q
    |||||    
T  37657127 tgtcc 37657131  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 289
Target Start/End: Complemental strand, 47642560 - 47642498
Alignment:
Q  227 atttctttgtatattttggttgtccaatgagttgtctcaaaaagtggtttttcgaataacatt 289  Q
    ||||||||||||| |||||||||||||  ||||||| |||||| ||||| ||| |||||||||    
T  47642560 atttctttgtataatttggttgtccaacaagttgtcccaaaaaatggttgttcaaataacatt 47642498  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 207 - 253
Target Start/End: Complemental strand, 45008137 - 45008091
Alignment:
Q  207 gtttttgtgtcagtcattacatttctttgtatattttggttgtccaa 253  Q
    |||||||| ||| || |||||||||||||||||||||| ||||||||    
T  45008137 gtttttgtatcaatccttacatttctttgtatattttgattgtccaa 45008091  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 251
Target Start/End: Complemental strand, 45065935 - 45065831
Alignment:
Q  146 tgtgacaactttctctctcacagtcactttgtattcttatttttctttcttcgttgctttggtttttgtgtcagtcattacatttctttgtatattttgg 245  Q
    |||||||||||||||||||| | |||| |  |||||| ||||| || |||   ||||||||||||||||||||    | |||||||||| |||||||||     
T  45065935 tgtgacaactttctctctcatactcacatcatattctcatttt-ctctctctattgctttggtttttgtgtcaagattcacatttctttctatattttga 45065837  T
Q  246 ttgtcc 251  Q
    ||||||    
T  45065836 ttgtcc 45065831  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 34307522 - 34307459
Alignment:
Q  199 ttgctttggtttttgtgtcagtcattacatttctttgtatattttggttgtccaatgagttgtc 262  Q
    |||||||||||||||| ||| |   || ||||||||||||| |||||||||||||| |||||||    
T  34307522 ttgctttggtttttgtatcactacctaaatttctttgtataatttggttgtccaataagttgtc 34307459  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 289
Target Start/End: Complemental strand, 4494218 - 4494128
Alignment:
Q  199 ttgctttggtttttgtgtcagtcattacatttctttgtatattttggttgtccaatgagttgtctcaaaaagtggtttttcgaataacatt 289  Q
    |||||||| ||||||||||| |   || ||||||||||||| |||||||||||||  |||||||  || || ||||| ||| |||||||||    
T  4494218 ttgctttgatttttgtgtcactacctaaatttctttgtataatttggttgtccaacaagttgtcataagaaatggttgttcaaataacatt 4494128  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 48346916 - 48346968
Alignment:
Q  199 ttgctttggtttttgtgtcagtcattacatttctttgtatattttggttgtcc 251  Q
    |||||||||||||||||||| |  | | |||||||||||||||| ||||||||    
T  48346916 ttgctttggtttttgtgtcaatattcatatttctttgtatatttaggttgtcc 48346968  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 51764729 - 51764765
Alignment:
Q  91 ttttttaaatgtcaagttacaaatgtgcattaactca 127  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  51764729 ttttttaaatgtcaacttacaaatgtgcatttactca 51764765  T

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Target: scaffold0034 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 286
Target Start/End: Original strand, 22694 - 22755
Alignment:
Q  225 acatttctttgtatattttggttgtccaatgagttgtctcaaaaagtggtttttcgaataac 286  Q
    ||||||||||||||||||||||||||| |  ||||||| || ||| ||||| ||| ||||||    
T  22694 acatttctttgtatattttggttgtcccacaagttgtcccataaaatggttgttcaaataac 22755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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