View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1407_low_4 (Length: 499)
Name: NF1407_low_4
Description: NF1407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1407_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Original strand, 31607266 - 31607743
Alignment:
| Q |
1 |
tctgaaaacttctttctaagcttacatgtccacaagtaatgacattatttttacctatgtatgtgaccaggattggtggatccttgggcagcaatattga |
100 |
Q |
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| T |
31607266 |
tctgaaaacttctttctaagcttacatgtccacaagtaatgacattatttttacctatgtatgtgacaaggattggtggatccatgggcagcaatattga |
31607365 |
T |
|
| Q |
101 |
tgggagctttgtccggctcaattccatggtacacgatgatggtgttgcacaaaagatcgtcattctttcaaagtgtagatgatacattaggagtctttca |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
31607366 |
tgggagctttgtccggttcaattccatggtacacgatgatggtgttgcacaaaaaatcaccattctttcaaagtgtagatgatacattaggagtctttca |
31607465 |
T |
|
| Q |
201 |
cactcatgctgtggctggtattcttgggggaatcctttctggtgtgtttgccaaacctaaacttttgaggattctctatggtccttatgggtctggctta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31607466 |
cactcatgctgtggctggtattcttgggggaatcctttctggtgtgtttgccaaacctaaacttttgaggattctctatggtccttatgggtctggctta |
31607565 |
T |
|
| Q |
301 |
ttgtatagttattttgatgataatataggtcaaggaatcaagcaaatgtggtaccaattattaggagcagtttttattactatttggaatgttgttatta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31607566 |
ttgtatagttattttgatgataatataggtcaaggaatcaagcaaatgtggtaccaattattaggagcagtttttattactatttggaatgttgttatta |
31607665 |
T |
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| Q |
401 |
ctagtctgatttgtattcttttaaatcgctttgtgaatcttcgaatgcaagaagaagagcttgaggttggtgatgatg |
478 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31607666 |
ctagtctgatttgtattcttttaaatcgctttgtgaatcttcgaatgcaagaagaagaccttgaggttggtgatgatg |
31607743 |
T |
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