View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14080_low_1 (Length: 607)
Name: NF14080_low_1
Description: NF14080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14080_low_1 |
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| [»] scaffold0035 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 499; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 13 - 579
Target Start/End: Original strand, 5823266 - 5823832
Alignment:
| Q |
13 |
aatattgaaacctgaccctgaacaagcaaatttcataacaaaagaatgttctggagaaaattgggaacgtataatcccaagaatttggcctaacacaaag |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5823266 |
aatattgaaacctgaccctgaacaagcaaatttcataacaaaagaatgttctggagaaaattgggaacgtataatcccaagaatttggcctaacacaaag |
5823365 |
T |
|
| Q |
113 |
taccttgaggttattgtcactggtgctatggctcagtacattccaacccttgattattacagtggtaacctaccaaagccatgtacaatatatgcttcat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
5823366 |
taccttgaggttattgtcactggtgctatggctcagtacattcctacccttgattattatagtggtaacctaccaaaaccatgtacaatatatgcttcat |
5823465 |
T |
|
| Q |
213 |
ctgaatgctattttggacttaaccttaagcctatgacagaacctaatgaagtttcttacaccattatgccaaacatgggttactttgaatttttaccact |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5823466 |
ctgaatgctattttggacttaaccttaagcctatgacagaacctaatgaagtttcttacaccattatgccaaacatgggttactttgaatttttaccact |
5823565 |
T |
|
| Q |
313 |
tgacgagtcacctccaaaactagtagaccttgttgatgtggaaattggtaaattttacgaatttattataactacttattctggtctttgtcgttacaaa |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5823566 |
tgacgagtcacctccaaaactagtagaccttgttgatgtggaaattggtaaattttacgaatttattataactacttattctggtctttgtcgttacaaa |
5823665 |
T |
|
| Q |
413 |
gttggtgatattcttcaagtaacaggattccataactcaaatccacaattcaagtttgtaaggcgaaagaatgtgttgttgagtattgatatggataaaa |
512 |
Q |
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| T |
5823666 |
gttggtgatattcttcaagtaacaggattccataactcaaatccacaattcaagtttgtaaggcgaaagaacgtgctgttgagtatcgattcggataaaa |
5823765 |
T |
|
| Q |
513 |
cagacgaatcagagcttcaaaaagcaattgaaaatgcttctgagttgttgaaaaagttcaacacaag |
579 |
Q |
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| T |
5823766 |
cagacgaatcggagcttcaaaaagctattgaaaatgcgtctgcattgttaaaggagttcaaaacaag |
5823832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 50 - 311
Target Start/End: Complemental strand, 5832763 - 5832502
Alignment:
| Q |
50 |
acaaaagaatgttctggagaaaattgggaacgtataatcccaagaatttggcctaacacaaagtaccttgaggttattgtcactggtgctatggctcagt |
149 |
Q |
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| T |
5832763 |
acaaaagaatgttcaggagacaattgggaacgtataatcccaagaatctggcctaacacaaagtatcttgaagttattgtcactggtgctatggctcagt |
5832664 |
T |
|
| Q |
150 |
acattccaacccttgattattacagtggtaacctaccaaagccatgtacaatatatgcttcatctgaatgctattttggacttaaccttaagcctatgac |
249 |
Q |
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||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
5832663 |
acattcctacccttgattattacagtggtaaccttccaaaaccatgtacaatgtatgcttcatctgaatgttattttggtcttaaccttaagcctatgac |
5832564 |
T |
|
| Q |
250 |
agaacctaatgaagtttcttacaccattatgccaaacatgggttactttgaatttttaccac |
311 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5832563 |
agaaccaaatgaagtttcttacaccattatgccaaacatgggttactttgaatttttaccac |
5832502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 320 - 579
Target Start/End: Complemental strand, 5832466 - 5832207
Alignment:
| Q |
320 |
tcacctccaaaactagtagaccttgttgatgtggaaattggtaaattttacgaatttattataactacttattctggtctttgtcgttacaaagttggtg |
419 |
Q |
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| T |
5832466 |
tcacctccaaagctagtagaccttgctgatgtccaaattggtaaattttatgagcttgtaatcacaacttattccggtttttgccgttacagagttggtg |
5832367 |
T |
|
| Q |
420 |
atattcttcaagtaacaggattccataactcaaatccacaattcaagtttgtaaggcgaaagaatgtgttgttgagtattgatatggataaaacagacga |
519 |
Q |
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||||||||||||| | ||||||||||| || |||| || ||||| || || ||||||||||| |||||||||||||| ||| ||||||||||||||| |
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| T |
5832366 |
atattcttcaagtcaatggattccataattctgatcctcagttcaaattcgtgaggcgaaagaacgtgttgttgagtatcgattcggataaaacagacga |
5832267 |
T |
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| Q |
520 |
atcagagcttcaaaaagcaattgaaaatgcttctgagttgttgaaaaagttcaacacaag |
579 |
Q |
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||| |||||||||||||| ||||||||||| |||| ||||| || ||||||| ||||| |
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| T |
5832266 |
atcggagcttcaaaaagctattgaaaatgcgtctgcattgttaaaggagttcaaaacaag |
5832207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 68 - 303
Target Start/End: Original strand, 78088 - 78323
Alignment:
| Q |
68 |
gaaaattgggaacgtataatcccaagaatttggcctaacacaaagtaccttgaggttattgtcactggtgctatggctcagtacattccaacccttgatt |
167 |
Q |
| |
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|||||||||||| | |||||| || |||||||||||||| || || | || || ||||| ||||||||||||||||| ||||||||||| ||| ||| |
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| T |
78088 |
gaaaattgggaaggaataatcataaagatttggcctaacaccaaatatttagatgtcattgtaactggtgctatggctcaatacattccaacacttaatt |
78187 |
T |
|
| Q |
168 |
attacagtggtaacctaccaaagccatgtacaatatatgcttcatctgaatgctattttggacttaaccttaagcctatgacagaacctaatgaagtttc |
267 |
Q |
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| T |
78188 |
actacagtggtgggttacctctttcatgtactatgtatgcttcctcagaatgctactttggacttaaccttaatccaatgtgcaaaccatctgaggtttc |
78287 |
T |
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| Q |
268 |
ttacaccattatgccaaacatgggttactttgaatt |
303 |
Q |
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|||||||| ||||||||||||| ||||||||||| |
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| T |
78288 |
atacaccatcatgccaaacatggcctactttgaatt |
78323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 404 - 537
Target Start/End: Original strand, 78424 - 78557
Alignment:
| Q |
404 |
cgttacaaagttggtgatattcttcaagtaacaggattccataactcaaatccacaattcaagtttgtaaggcgaaagaatgtgttgttgagtattgata |
503 |
Q |
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||||||| ||||||||| ||||| | || || || || |||||||||| ||||||||| | ||||| | ||||||||||||||| | ||||||||| |
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| T |
78424 |
cgttacagagttggtgacattctccgtgtcaccgggtttcataactcaacaccacaattccattttgtgcgtcgaaagaatgtgttgcttagtattgatt |
78523 |
T |
|
| Q |
504 |
tggataaaacagacgaatcagagcttcaaaaagc |
537 |
Q |
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|||||||||||| || |||||||| |||||||| |
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| T |
78524 |
cggataaaacagatgagtcagagctacaaaaagc |
78557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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