View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14080_low_2 (Length: 420)
Name: NF14080_low_2
Description: NF14080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14080_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 17926348 - 17926757
Alignment:
| Q |
1 |
aaaaattacttatttaactagaaatgacggaaaaacagtttggaggggaccgagaaaataatagagta-caaaacttgattttaggtcaaagttgatgat |
99 |
Q |
| |
|
||||||||||||||||| || ||| | | ||||||| ||||||||||||| | ||| |||||||||| | |||||||||||||||||||| |||||||| |
|
|
| T |
17926348 |
aaaaattacttatttaagtataaaataagaaaaaacaatttggaggggacccaaaaactaatagagtaactaaacttgattttaggtcaaaattgatgat |
17926447 |
T |
|
| Q |
100 |
actgcacatggataatttgct---atcgattcaaataataacggaaaattagttttaaatgataatcaaattataataaatgtatgactatgatcattaa |
196 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
17926448 |
actccacatggataatttgctgctatcgattcaaataataagggaaaattagttttaaataataatcaaattttaataaatgtatgactatgatccttaa |
17926547 |
T |
|
| Q |
197 |
tcatgtccctcttaatacgttcttgacgatgtttctatgataaagcaaatactaccatttcaacatgacaatcgtttcatttggggttgaaaacatgaca |
296 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
17926548 |
tcttgtccctcttaatacgttcttgacgatgtttctatgataaagcaaatactaccatttcaacatgacaatcgtttcatttggggtagaaaacatgaca |
17926647 |
T |
|
| Q |
297 |
atcgtttcttaataaagataatgctgatgatgcgacacttatctccaatttggcttagcgtcacggatgggttgagtttagacctctcagatagctacac |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17926648 |
atcgtttcttaataaagataatgctgatgatgcgacacttatctccaatttggcttagcgtcacggatgggttgagtttagacctctcagatagctacac |
17926747 |
T |
|
| Q |
397 |
acacatttat |
406 |
Q |
| |
|
|||||||||| |
|
|
| T |
17926748 |
acacatttat |
17926757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 12955083 - 12954691
Alignment:
| Q |
1 |
aaaaattacttatttaactagaaatgacggaaaaacagtttggaggggaccgagaaaataatagagtacaaaacttgattttaggtcaaagttgatgata |
100 |
Q |
| |
|
||||||||||||||||| || ||| || |||||||| ||||||||||||||||||| | ||||||||| |||||| ||||||||||||| ||||||||| |
|
|
| T |
12955083 |
aaaaattacttatttaagtataaaagaatgaaaaacaatttggaggggaccgagaaacttatagagtactaaactttattttaggtcaaaattgatgata |
12954984 |
T |
|
| Q |
101 |
ctgcacatggataatttgct---atcgattcaaataataacggaaaattagttttaaatgataatcaaattataataaatgtatgactatgatcattaat |
197 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
12954983 |
ctgcacatggataatttgctgctatcgattcaaataataagggaaaattagttttaaataataatcaaattttaataaatgtatgactataatcattaat |
12954884 |
T |
|
| Q |
198 |
catgtccctcttaatacgttcttgacgatgtttctatgataaagcaaatactaccatttcaacatgacaatcgtttcatttggggttgaaaacatgacaa |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
12954883 |
tatgtccctcttaatacgttcttgacgatgtttctatgataaagtaaatactaccattacaacatgacaatcgtttcatttggggtagaaaacatgacaa |
12954784 |
T |
|
| Q |
298 |
tcgtttcttaataaagataatgctgatgat-----gcgacacttatctccaatttggcttagcgtcacggatgggttgagtttagacctctca |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
12954783 |
tcgtttcttaataaagataatgctgatgatgcgatgcgacacttatctccaatttggcttagcgtcacggatgggttgagttgagacttctca |
12954691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 29 - 321
Target Start/End: Complemental strand, 12929612 - 12929315
Alignment:
| Q |
29 |
ggaaaaacagtttggaggggaccgagaaaataatagagtacaaaacttgattttaggtcaaagttgatgatactgcacatggataatttgct---atcga |
125 |
Q |
| |
|
||||||| | |||||| |||| ||||||| ||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||| ||||| |
|
|
| T |
12929612 |
ggaaaaataatttggaagggatcgagaaactaatagagtactaaacttgattttaggtcaaaattgatgatacagcacatggataatttgctgctatcga |
12929513 |
T |
|
| Q |
126 |
ttcaaa--taataacggaaaattagttttaaatgataatcaaattataataaatgtatgactatgatcattaatcatgtccctcttaatacgttcttgac |
223 |
Q |
| |
|
|||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12929512 |
ttcaaaaataatagaggaaaattagttttaaataataatcaaattataataaatgtatgactatgatcattaatcatgtccctcttaatacgttcttgac |
12929413 |
T |
|
| Q |
224 |
gatgtttctatgataaagcaaatactaccatttcaacatgacaatcgtttcatttggggttgaaaacatgacaatcgtttcttaataaagataatgct |
321 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12929412 |
gatgtttctatgataaagtaaatactaccatttcaacatgacaatcgtttcatttggggtagaaaacatgacaatcgtttcttaataaagataatgct |
12929315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 30 - 241
Target Start/End: Complemental strand, 12945970 - 12945756
Alignment:
| Q |
30 |
gaaaaacagtttggaggggaccgagaaaataatagagtacaaaacttgattttaggtcaaagttgatgatactgcacatggataatttgct---atcgat |
126 |
Q |
| |
|
|||||||| || |||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
12945970 |
gaaaaacaattgggaggggaccgagaaactaatagagtactaaacttgattttaggtcaaaattgatgatactgcacatcgataatttgctgctatcgat |
12945871 |
T |
|
| Q |
127 |
tcaaataataacggaaaattagttttaaatgataatcaaattataataaatgtatgactatgatcattaatcatgtccctcttaatacgttcttgacgat |
226 |
Q |
| |
|
| ||||||||| |||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
12945870 |
ttaaataataagggaaaattagttttaaataataatctaattttaataaatgtatgactatgatcattaattatgtccctcttaatacgttcttgacgat |
12945771 |
T |
|
| Q |
227 |
gtttctatgataaag |
241 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
12945770 |
gtttctatgataaag |
12945756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 117 - 290
Target Start/End: Complemental strand, 12904246 - 12904071
Alignment:
| Q |
117 |
tgctatcgattcaaataataacggaaaattagttttaaatgataatcaaattataataaatgtatgactat-gatcattaatcatgtccctcttaatacg |
215 |
Q |
| |
|
||||||| ||||||||||||| || ||||||||||||||| | ||| |||| ||||||| |||| ||||| | ||||||||||||||| ||| ||||| |
|
|
| T |
12904246 |
tgctatcaattcaaataataagggcaaattagttttaaataaaaatataattttaataaaagtatcactatcggtcattaatcatgtcctgcttcatacg |
12904147 |
T |
|
| Q |
216 |
ttcttgacgatgtttctatgataaag-caaatactaccatttcaacatgacaatcgtttcatttggggttgaaaac |
290 |
Q |
| |
|
|| |||| ||| ||| ||||||||| ||||||| ||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
12904146 |
ttattgatgatatttttatgataaaaacaaatacaaccatttcaacatgacaatcgtttcttttggggtagaaaac |
12904071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 293 - 326
Target Start/End: Complemental strand, 12938643 - 12938610
Alignment:
| Q |
293 |
gacaatcgtttcttaataaagataatgctgatga |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
12938643 |
gacaatcgtttcttaataaagataatgctgatga |
12938610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 10744110 - 10744158
Alignment:
| Q |
242 |
caaatactaccatttcaacatgacaatcgtttcatttggggttgaaaac |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
10744110 |
caaatactaccatttcaacatgacaatcgtttcttttggggtagaaaac |
10744158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University