View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14080_low_3 (Length: 305)
Name: NF14080_low_3
Description: NF14080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14080_low_3 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 3112228 - 3112531
Alignment:
| Q |
1 |
atggaaacaacttatgacatgtagtagatcactaaatgtcgttcatattttcatgtttctgtataataagcagnnnnnnnccaatggaaatcaccattat |
100 |
Q |
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| T |
3112228 |
atggaaacaacttatgacctgtagtagatctctaaatgtcgttcatattttcatgtttatgtataataagcagtttttt-ccaatggaaatcaccattat |
3112326 |
T |
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| Q |
101 |
acatttcaatttataattcatagtttgataattgaagttcattattatccgctctttacgacgtttaccttagttctacattgacatgaagtatccattt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3112327 |
acatttcaatttataattcatagtttgataattgaagttcattattatccgatctttacgacgtttaccttagttctacattgacatgaagtatccattt |
3112426 |
T |
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| Q |
201 |
cacaaaatggataattgttgtcaacataatatatgttccaggttgaaaatgttacattgcatatcccctatcgacctgaaattcattgataaatttttag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3112427 |
cacaaaatggataattgttgtcaacataatatatgttccaagttggaaatgttacattgcatatcccctatcgacctgaaattcattgataaatttttag |
3112526 |
T |
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| Q |
301 |
aggtt |
305 |
Q |
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||||| |
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| T |
3112527 |
aggtt |
3112531 |
T |
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