View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14080_low_4 (Length: 299)
Name: NF14080_low_4
Description: NF14080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14080_low_4 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 13 - 299
Target Start/End: Original strand, 7297806 - 7298092
Alignment:
| Q |
13 |
aatatacaagaaacacaatataaaaaatcaggtaacaatatttacctttgatagccactgaaggctgtaagaggaattaatgaaatgtaaacttcgatta |
112 |
Q |
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| T |
7297806 |
aatatacaagaaacacaatataaaaaatcaggtaacaatatttacctttgatagccactgaaggctgtgagaggaatgaatgaaatgtaaacttcgatta |
7297905 |
T |
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| Q |
113 |
ggaaaaactctactatagaaagaaccaggaaccccaaaaaagtagcaagaactcattttagttttgatttcatcttgcagtttctctttaaagttgtcaa |
212 |
Q |
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| T |
7297906 |
ggaaaaactctactatagaaagaaccaggaaccccaaaaaagtagcaagaactcattttagttttgatttcatcttgcagtttctctttaaagttgtcaa |
7298005 |
T |
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| Q |
213 |
gtgacttaaatatgttgttgaagtcatttccagaaacatcattaaaaaatatcttgtactcgggagatgaatggttcaattgttggc |
299 |
Q |
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| T |
7298006 |
gtgacttaaatatgttgttgaagtcatttccagaaacatcattaaaaaatatcttgtactcgggagatgaatggttcaattgttggc |
7298092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 299
Target Start/End: Original strand, 7293331 - 7293618
Alignment:
| Q |
13 |
aatatacaagaaacacaatataaaaaat-caggtaacaatatttacctttgatagccactgaaggctgtaagaggaattaatgaaatgtaaacttcgatt |
111 |
Q |
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| T |
7293331 |
aatatacaagaaacacaatataattttttcagataataatataaacctttgatagccagtgaagactgtaagagcagtggacgaaatgcagacttcgatc |
7293430 |
T |
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| Q |
112 |
aggaaaaactctactatagaaagaaccaggaaccccaaaaaagtagcaagaactcattttagttttgatttcatcttgcagtttctctttaaagttgtca |
211 |
Q |
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| T |
7293431 |
aggaaaaactctatcatagaaagaaccaggaacaccaaagaagtagcaagggctcatttcagttttgatttcatcaagtagtttatgtttaaagctatca |
7293530 |
T |
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| Q |
212 |
agtgacttaaatatgttgttgaagtcatttccagaaacatcattaaaaaatatcttgtactcgggagatgaatggttcaattgttggc |
299 |
Q |
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| T |
7293531 |
agtgacttaaaaatgttgttgaagtcattccctgaaagatcgttaaaaaagatcttgtattcgggagatgcatatttcaattgttggc |
7293618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 56 - 144
Target Start/End: Original strand, 32709628 - 32709716
Alignment:
| Q |
56 |
acctttgatagccactgaaggctgtaagaggaattaatgaaatgtaaacttcgattaggaaaaactctactatagaaagaaccaggaac |
144 |
Q |
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| T |
32709628 |
accttagatagccacataaggctgtaagaggaatggacaaaatgcaaactttgattaggaaaaatcctgccatagaaagaaccaggaac |
32709716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 161
Target Start/End: Original strand, 32703914 - 32704019
Alignment:
| Q |
56 |
acctttgatagccactgaaggctgtaagaggaattaatgaaatgtaaacttcgattaggaaaaactctactatagaaagaaccaggaaccccaaaaaagt |
155 |
Q |
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| T |
32703914 |
accttagatagaaacttaaggctataagaggaatgaacaaaatgcaaacttttattaggaaaaatcctgccatagaaggaaccgggaaccccaaagaagt |
32704013 |
T |
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| Q |
156 |
agcaag |
161 |
Q |
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| T |
32704014 |
agcaag |
32704019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 243
Target Start/End: Original strand, 27736654 - 27736841
Alignment:
| Q |
56 |
acctttgatagccactgaaggctgtaagaggaattaatgaaatgtaaacttcgattaggaaaaactctactatagaaagaaccaggaaccccaaaaaagt |
155 |
Q |
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| T |
27736654 |
accttagatagccattgaagactatacgaggaatgaacaaaatgcaaactattatctggaaaaattctgccataaaatgaaccaggaactccatagaagt |
27736753 |
T |
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| Q |
156 |
agcaagaactcattttagttttgatttcatcttgcagtttctctttaaagttgtcaagtgacttaaatatgttgttgaagtcatttcc |
243 |
Q |
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| T |
27736754 |
agcacgggcctattttagtttccatttcatcacgtagtttctctttgaaggtgtcaagggacttgaatacgttgttgaagtcatttcc |
27736841 |
T |
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