View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14081_high_3 (Length: 614)

Name: NF14081_high_3
Description: NF14081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14081_high_3
NF14081_high_3
[»] chr8 (28 HSPs)
chr8 (8-599)||(27727532-27728124)
chr8 (85-194)||(26594055-26594163)
chr8 (45-125)||(27625114-27625194)
chr8 (522-597)||(29973050-29973125)
chr8 (544-599)||(6864507-6864562)
chr8 (382-452)||(27624765-27624835)
chr8 (537-599)||(34770859-34770921)
chr8 (516-592)||(10075571-10075647)
chr8 (503-599)||(31862460-31862556)
chr8 (516-599)||(4558765-4558848)
chr8 (541-599)||(8799372-8799430)
chr8 (541-595)||(26284840-26284894)
chr8 (544-598)||(35869805-35869859)
chr8 (537-598)||(34213570-34213631)
chr8 (519-598)||(28769362-28769441)
chr8 (544-599)||(38561693-38561748)
chr8 (548-591)||(43704430-43704473)
chr8 (537-594)||(11415126-11415183)
chr8 (543-599)||(35298524-35298581)
chr8 (543-599)||(1470903-1470959)
chr8 (519-559)||(8062336-8062376)
chr8 (543-599)||(9836901-9836957)
chr8 (543-599)||(10460571-10460626)
chr8 (521-597)||(11185190-11185266)
chr8 (571-599)||(12224974-12225002)
chr8 (543-595)||(13561359-13561411)
chr8 (519-559)||(30277268-30277308)
chr8 (543-599)||(41336692-41336748)
[»] chr5 (21 HSPs)
chr5 (1-178)||(12520080-12520257)
chr5 (541-599)||(35960381-35960438)
chr5 (519-599)||(28586789-28586869)
chr5 (543-599)||(41277397-41277453)
chr5 (541-599)||(14295473-14295531)
chr5 (541-599)||(38047900-38047958)
chr5 (522-599)||(15003540-15003617)
chr5 (546-599)||(39823171-39823224)
chr5 (543-599)||(26516367-26516423)
chr5 (543-599)||(34205206-34205262)
chr5 (519-599)||(38831480-38831559)
chr5 (516-599)||(8481185-8481268)
chr5 (544-595)||(18704084-18704135)
chr5 (549-599)||(32059642-32059692)
chr5 (569-599)||(35135735-35135765)
chr5 (505-559)||(36638754-36638808)
chr5 (569-599)||(37063147-37063177)
chr5 (547-597)||(39257438-39257487)
chr5 (569-599)||(39750110-39750140)
chr5 (544-584)||(15557295-15557335)
chr5 (548-596)||(41017697-41017745)
[»] chr6 (13 HSPs)
chr6 (506-599)||(2117370-2117463)
chr6 (519-599)||(281871-281951)
chr6 (543-599)||(1402963-1403019)
chr6 (545-599)||(2027455-2027509)
chr6 (516-598)||(12757522-12757604)
chr6 (541-599)||(28660805-28660863)
chr6 (542-599)||(4006681-4006738)
chr6 (537-598)||(14656286-14656347)
chr6 (539-599)||(1280911-1280971)
chr6 (543-597)||(5623125-5623179)
chr6 (549-598)||(10452413-10452462)
chr6 (551-599)||(3217245-3217293)
chr6 (519-599)||(32386586-32386666)
[»] chr4 (23 HSPs)
chr4 (519-598)||(49219107-49219186)
chr4 (519-598)||(30207594-30207672)
chr4 (516-599)||(28581930-28582013)
chr4 (544-598)||(24444006-24444060)
chr4 (545-599)||(49085956-49086010)
chr4 (543-596)||(2980513-2980566)
chr4 (505-589)||(26747411-26747496)
chr4 (522-593)||(18019944-18020016)
chr4 (519-599)||(24929460-24929540)
chr4 (544-599)||(4071849-4071904)
chr4 (516-587)||(42866047-42866118)
chr4 (516-599)||(52735089-52735172)
chr4 (541-599)||(10192251-10192309)
chr4 (516-598)||(21157736-21157818)
chr4 (569-599)||(32724086-32724116)
chr4 (553-599)||(42321936-42321982)
chr4 (545-595)||(55870390-55870440)
chr4 (546-599)||(24160545-24160598)
chr4 (568-597)||(36734862-36734891)
chr4 (544-597)||(55372390-55372443)
chr4 (543-595)||(927447-927499)
chr4 (543-599)||(2996540-2996596)
chr4 (543-599)||(54325084-54325140)
[»] chr2 (29 HSPs)
chr2 (541-599)||(37292392-37292450)
chr2 (519-599)||(17952723-17952804)
chr2 (543-599)||(5043607-5043663)
chr2 (543-599)||(11513865-11513921)
chr2 (519-599)||(32694179-32694259)
chr2 (505-599)||(22681194-22681288)
chr2 (521-599)||(28933791-28933869)
chr2 (541-599)||(33256707-33256765)
chr2 (537-599)||(33942117-33942179)
chr2 (549-598)||(3102661-3102710)
chr2 (519-599)||(10198503-10198581)
chr2 (522-593)||(3059300-3059372)
chr2 (543-599)||(14666515-14666571)
chr2 (505-597)||(17221549-17221641)
chr2 (543-599)||(36863672-36863728)
chr2 (516-599)||(6993744-6993827)
chr2 (556-599)||(31740019-31740062)
chr2 (543-598)||(37053562-37053617)
chr2 (541-599)||(35485884-35485942)
chr2 (569-598)||(1160817-1160846)
chr2 (550-599)||(4550744-4550793)
chr2 (541-594)||(9886285-9886337)
chr2 (541-590)||(37276722-37276771)
chr2 (535-599)||(5940881-5940945)
chr2 (543-599)||(6988082-6988138)
chr2 (516-599)||(7103502-7103586)
chr2 (543-599)||(10143139-10143195)
chr2 (538-598)||(37766766-37766826)
chr2 (541-597)||(39983311-39983367)
[»] chr7 (24 HSPs)
chr7 (519-594)||(23721478-23721553)
chr7 (545-599)||(5006558-5006612)
chr7 (546-599)||(9527140-9527193)
chr7 (541-598)||(17989068-17989125)
chr7 (519-599)||(24363624-24363704)
chr7 (505-599)||(38010681-38010775)
chr7 (545-599)||(47004054-47004108)
chr7 (537-599)||(47046149-47046211)
chr7 (543-599)||(11208416-11208472)
chr7 (543-599)||(45777218-45777274)
chr7 (540-599)||(3501010-3501069)
chr7 (540-599)||(31338475-31338534)
chr7 (545-599)||(1417231-1417285)
chr7 (537-599)||(3468581-3468643)
chr7 (536-594)||(5369731-5369789)
chr7 (544-598)||(28340444-28340498)
chr7 (541-599)||(40689031-40689089)
chr7 (540-585)||(25558235-25558280)
chr7 (540-585)||(25558433-25558478)
chr7 (522-599)||(29363485-29363562)
chr7 (546-599)||(31002728-31002781)
chr7 (505-585)||(15075094-15075174)
chr7 (548-592)||(24909638-24909682)
chr7 (543-599)||(30456497-30456553)
[»] chr3 (29 HSPs)
chr3 (546-599)||(23530234-23530288)
chr3 (544-599)||(36783382-36783437)
chr3 (516-599)||(40122773-40122855)
chr3 (505-579)||(22214668-22214742)
chr3 (521-598)||(22031164-22031241)
chr3 (544-597)||(28306127-28306180)
chr3 (544-596)||(10540540-10540592)
chr3 (519-599)||(24887306-24887386)
chr3 (519-599)||(38462248-38462328)
chr3 (544-599)||(1816550-1816605)
chr3 (544-599)||(24235731-24235786)
chr3 (516-599)||(32555002-32555084)
chr3 (544-599)||(37788827-37788882)
chr3 (548-599)||(54965473-54965524)
chr3 (541-599)||(21872316-21872374)
chr3 (545-599)||(31337450-31337504)
chr3 (537-599)||(36646423-36646485)
chr3 (518-592)||(51510215-51510289)
chr3 (546-599)||(3467438-3467491)
chr3 (543-596)||(21367637-21367690)
chr3 (538-595)||(23249529-23249586)
chr3 (554-595)||(28779327-28779368)
chr3 (543-597)||(33965536-33965592)
chr3 (537-590)||(48807684-48807737)
chr3 (543-599)||(2201095-2201151)
chr3 (540-595)||(2321145-2321201)
chr3 (519-599)||(23315593-23315673)
chr3 (543-599)||(27792839-27792895)
chr3 (542-590)||(45590640-45590688)
[»] chr1 (31 HSPs)
chr1 (505-599)||(30257650-30257744)
chr1 (518-599)||(48830098-48830179)
chr1 (543-599)||(45205035-45205091)
chr1 (544-599)||(10581125-10581180)
chr1 (543-589)||(4078196-4078242)
chr1 (541-599)||(4215339-4215397)
chr1 (543-597)||(25006081-25006135)
chr1 (545-599)||(28467356-28467410)
chr1 (505-598)||(9656618-9656711)
chr1 (541-597)||(7218119-7218175)
chr1 (519-599)||(25479548-25479628)
chr1 (515-599)||(27738199-27738283)
chr1 (543-598)||(45107590-45107648)
chr1 (520-599)||(3924591-3924670)
chr1 (543-598)||(5150905-5150960)
chr1 (544-599)||(15565880-15565935)
chr1 (541-596)||(17269220-17269275)
chr1 (543-593)||(8130409-8130459)
chr1 (537-599)||(15488921-15488983)
chr1 (541-599)||(33527192-33527250)
chr1 (537-587)||(41638499-41638549)
chr1 (568-598)||(45804245-45804275)
chr1 (537-599)||(49888734-49888796)
chr1 (541-594)||(7262563-7262616)
chr1 (543-596)||(27887165-27887218)
chr1 (551-592)||(29007771-29007812)
chr1 (545-593)||(5756735-5756783)
chr1 (519-599)||(10199431-10199511)
chr1 (519-599)||(15361680-15361760)
chr1 (543-599)||(17422985-17423041)
chr1 (543-595)||(42556678-42556730)
[»] scaffold0024 (1 HSPs)
scaffold0024 (543-599)||(27543-27599)
[»] scaffold0116 (1 HSPs)
scaffold0116 (540-597)||(18013-18070)
[»] scaffold0110 (1 HSPs)
scaffold0110 (538-599)||(4265-4326)
[»] scaffold0053 (1 HSPs)
scaffold0053 (548-599)||(20146-20197)
[»] scaffold0153 (2 HSPs)
scaffold0153 (569-598)||(6571-6600)
scaffold0153 (569-598)||(13591-13620)


Alignment Details
Target: chr8 (Bit Score: 473; Significance: 0; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 8 - 599
Target Start/End: Original strand, 27727532 - 27728124
Alignment:
Q  8 gctctcgatcgtgtcatggttggaagaacaacaattgtagttgcacacagactttctaccattaggaatgcagataagatagctgttgttgaaggaggga 107  Q
    ||||| |||| ||||||| |||| ||||||||  |  ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  27727532 gctcttgatcatgtcatgattggtagaacaactgtgatagttgcacacagactttctaccattaagaatgcagatatgatagctgttgttgaaggaggga 27727631  T
Q  108 gcattgtggaaactggaattcacgaggaactcatttccaactcaaacagtgtatatgcatctcttgttcaaggccaaccttctccagatcatagcttggg 207  Q
    || ||||||||||||||| ||||||||| |||||||||||  |||| ||| ||||| |||||||||||||||| |||||||||||||||| |||||||||    
T  27727632 gcgttgtggaaactggaaatcacgaggagctcatttccaatccaaatagtttatattcatctcttgttcaaggtcaaccttctccagatcctagcttggg 27727731  T
Q  208 acagtcgtcaaggtgcttcattctcatccataattgtaattaacataattgacgttaaagtcctaagacaaaggtgcggttgcatcaagattatggtcgc 307  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27727732 acagtcatcaaggtgcttcattctcatccataattataattaacataattgacgtcaaagtcctaagacaaaggtgcggttgcatcaagattatggtcgc 27727831  T
Q  308 ggagatgtgacctaaatggtagttacatacatttt-ttaaagccccgactaaaattacttcactttatcaagatattgcatttgaaaaagactgattcca 406  Q
    |||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||    
T  27727832 ggagatgtgacctaaatggtagttgcaaacatttttttaaagccccgactaaaattacttcaccttatcaagatattgcatttgaaaaagactgattgca 27727931  T
Q  407 tgactcaaatttgtatctcttagtgcatgtttggattgacttatttgagttgtgaaactgtttgagaaaacttaggaatagcctatgacatgtctttgca 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27727932 tgactcaaatttgtatctcttagtgcatgtttggattgacttatttgagttgtgaaactgtttgagaaaacttaggaatagcctatgacatgtctttgca 27728031  T
Q  507 taagctttctttagcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27728032 taagctttttttagcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 27728124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 85 - 194
Target Start/End: Complemental strand, 26594163 - 26594055
Alignment:
Q  85 gatagctgttgttgaaggagggagcattgtggaaactggaattcacgaggaactcatttccaactcaaacagtgta-tatgcatctcttgttcaaggcca 183  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  || || |||||||||||||||||||||||| |||||||||||  ||||||||||    
T  26594163 gatagctattgttgaaggagggagcattgtggaaactggaattcgtgatgagctcatttccaactcaaacagtgtattatgcatctct--ttcaaggcca 26594066  T
Q  184 accttctccag 194  Q
    ||||| |||||    
T  26594065 accttttccag 26594055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 45 - 125
Target Start/End: Complemental strand, 27625194 - 27625114
Alignment:
Q  45 tagttgcacacagactttctaccattaggaatgcagataagatagctgttgttgaaggagggagcattgtggaaactggaa 125  Q
    |||| ||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  27625194 tagtggcacacagactttctacaattaggaatgcagatatgatagctattgttgaaggagggagcattgtggaaactggaa 27625114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 522 - 597
Target Start/End: Complemental strand, 29973125 - 29973050
Alignment:
Q  522 ttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttatttta 597  Q
    |||||||||| | | ||| |||||||||||||||||||||| |||  |||| ||||||||||||||||||||||||    
T  29973125 ttatttccataaactctcaaggatagcttatgaaaacaacttatagcttatgtgaaaatagtttgactttatttta 29973050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 544 - 599
Target Start/End: Original strand, 6864507 - 6864562
Alignment:
Q  544 atagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||||||||||||| |||  ||| |||||||||||||||||||||||||||    
T  6864507 atagcttatgaaaacaacttataacttacatgaaaatagtttgactttattttatc 6864562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 382 - 452
Target Start/End: Complemental strand, 27624835 - 27624765
Alignment:
Q  382 ttgcatttgaaaaagactgattccatgactcaaatttgtatctcttagtgcatgtttggattgacttattt 452  Q
    |||||| ||||||||||||||||||| ||| | || ||||||||||||| || ||||||||||| ||||||    
T  27624835 ttgcatatgaaaaagactgattccattacttagatatgtatctcttagtacaggtttggattgatttattt 27624765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 537 - 599
Target Start/End: Complemental strand, 34770921 - 34770859
Alignment:
Q  537 ctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||||||||||||||||||| |||  ||| ||||||| | |||||||||||||||||    
T  34770921 ctctaggatagcttatgaaaacaacttatagcttaaatgaaaacaatttgactttattttatc 34770859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 516 - 592
Target Start/End: Original strand, 10075571 - 10075647
Alignment:
Q  516 tttagcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgacttta 592  Q
    |||||||||||| ||| | | ||||||||||||||||||||| | || |||  |||||| |||||||||||||||||    
T  10075571 tttagcttattttcataagctctctaggatagcttatgaaaatagcttataacttatataaaaatagtttgacttta 10075647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 503 - 599
Target Start/End: Complemental strand, 31862556 - 31862460
Alignment:
Q  503 tgcataagctttctttagcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||| | || ||||||||| ||| | | |||||||||| |||||||||||| || |||  ||||| || |||||||||||||||| |||||    
T  31862556 tgcataagctgttttcagcttattttcataagctctctaggataacttatgaaaacatcttatagcttatacgagaatagtttgactttatattatc 31862460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 516 - 599
Target Start/End: Complemental strand, 4558848 - 4558765
Alignment:
Q  516 tttagcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||| |||||||||| | | ||||||||||||||||| ||||| || |||   |||||||||||| ||| |||||||||||||    
T  4558848 tttagtttatttccataagctctctaggatagcttatggaaacagcttatagcatatatgaaaataatttaactttattttatc 4558765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 541 - 599
Target Start/End: Complemental strand, 8799430 - 8799372
Alignment:
Q  541 aggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||||| |||||| || ||| ||||| || |||||||||||||||||||||||    
T  8799430 aggatagcttataaaaacaccttataatttatctggaaatagtttgactttattttatc 8799372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 541 - 595
Target Start/End: Original strand, 26284840 - 26284894
Alignment:
Q  541 aggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattt 595  Q
    |||||| |||| ||||||||||  ||||||||||||||| |||||||||||||||    
T  26284840 aggataacttacgaaaacaacttgtactttatatgaaaacagtttgactttattt 26284894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 544 - 598
Target Start/End: Complemental strand, 35869859 - 35869805
Alignment:
Q  544 atagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttat 598  Q
    ||||||||||||||||||| |||  |||||||||||| |||||| ||||||||||    
T  35869859 atagcttatgaaaacaacttatagcttatatgaaaattgtttgaatttattttat 35869805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 537 - 598
Target Start/End: Original strand, 34213570 - 34213631
Alignment:
Q  537 ctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttat 598  Q
    ||||| |||| |||| |||||||||| |||  |||||||||| |||||||||||||||||||    
T  34213570 ctctatgataacttacgaaaacaactcataacttatatgaaagtagtttgactttattttat 34213631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 519 - 598
Target Start/End: Original strand, 28769362 - 28769441
Alignment:
Q  519 agcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttat 598  Q
    ||||||||||||| | | ||| |  |||||||||||||||| || |||  ||||| |||||||||||||||| |||||||    
T  28769362 agcttatttccataaactctccaaaatagcttatgaaaacagcttatagcttataagaaaatagtttgacttaattttat 28769441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 544 - 599
Target Start/End: Complemental strand, 38561748 - 38561693
Alignment:
Q  544 atagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||| |||||||||||||| ||| | || || ||||||||||||||||||||||||    
T  38561748 atagtttatgaaaacaacttatagtatagataaaaatagtttgactttattttatc 38561693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 548 - 591
Target Start/End: Original strand, 43704430 - 43704473
Alignment:
Q  548 cttatgaaaacaactaatactttatatgaaaatagtttgacttt 591  Q
    ||||||||||||||| ||| |||||||||||| |||||||||||    
T  43704430 cttatgaaaacaacttatagtttatatgaaaacagtttgacttt 43704473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 594
Target Start/End: Complemental strand, 11415183 - 11415126
Alignment:
Q  537 ctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttatt 594  Q
    ||||||||||||||||||||||| |  |||  |||||| |||||| ||||||||||||    
T  11415183 ctctaggatagcttatgaaaacagcgtataacttatataaaaataatttgactttatt 11415126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 599
Target Start/End: Original strand, 35298524 - 35298581
Alignment:
Q  543 gatagcttatgaaaacaactaatactttata-tgaaaatagtttgactttattttatc 599  Q
    |||||||||||||||||||| ||| |||||| ||||||  ||||| ||||||||||||    
T  35298524 gatagcttatgaaaacaacttatagtttatattgaaaactgtttggctttattttatc 35298581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 599
Target Start/End: Original strand, 1470903 - 1470959
Alignment:
Q  543 gatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||| ||||||||||| || |||  |||||||||| || |||||||||||||||||    
T  1470903 gataggttatgaaaacagcttatagcttatatgaaagtaatttgactttattttatc 1470959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 519 - 559
Target Start/End: Complemental strand, 8062376 - 8062336
Alignment:
Q  519 agcttatttccatcatccctctaggatagcttatgaaaaca 559  Q
    ||||||||||||| ||| ||||| |||||||||||||||||    
T  8062376 agcttatttccataatctctctaagatagcttatgaaaaca 8062336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 599
Target Start/End: Original strand, 9836901 - 9836957
Alignment:
Q  543 gatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||||||||||  |  ||  |||||||||||||||||||||||| ||||||    
T  9836901 gatagcttatgaaaacaggttgtaacttatatgaaaatagtttgactttactttatc 9836957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 599
Target Start/End: Complemental strand, 10460626 - 10460571
Alignment:
Q  543 gatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||||||||| ||| |||  || ||||||||||||||||| ||||||||||    
T  10460626 gatagcttatgaaaaccacttatagcttgtatgaaaatagtttgac-ttattttatc 10460571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 521 - 597
Target Start/End: Complemental strand, 11185266 - 11185190
Alignment:
Q  521 cttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttatttta 597  Q
    ||||||||||||| | ||| | ||||||| | |||||||||| ||| | ||| |||||||| |||| ||||||||||    
T  11185266 cttatttccatcagctctccatgatagctaacgaaaacaacttataatgtatttgaaaataatttggctttatttta 11185190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 571 - 599
Target Start/End: Original strand, 12224974 - 12225002
Alignment:
Q  571 atatgaaaatagtttgactttattttatc 599  Q
    |||||||||||||||||||||||||||||    
T  12224974 atatgaaaatagtttgactttattttatc 12225002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 595
Target Start/End: Original strand, 13561359 - 13561411
Alignment:
Q  543 gatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattt 595  Q
    |||||||| ||||||||| | ||| |||||||||||| | |||||||||||||    
T  13561359 gatagcttgtgaaaacaagttataatttatatgaaaacaatttgactttattt 13561411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 519 - 559
Target Start/End: Original strand, 30277268 - 30277308
Alignment:
Q  519 agcttatttccatcatccctctaggatagcttatgaaaaca 559  Q
    ||||||||||||| | | |||||||||||||||||||||||    
T  30277268 agcttatttccataaactctctaggatagcttatgaaaaca 30277308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 599
Target Start/End: Original strand, 41336692 - 41336748
Alignment:
Q  543 gatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||||||||||| |  || |||||||||||| | ||||||| |||||||||    
T  41336692 gatagcttatgaaaacaagttctagtttatatgaaaacaatttgactatattttatc 41336748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 12520080 - 12520257
Alignment:
Q  1 acaggaggctctcgatcgtgtcatggttggaagaacaacaattgtagttgcacacagactttctaccattaggaatgcagataagatagctgttgttgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||| ||    
T  12520080 acaggaggctctcgatcgtgtcatggttggaagaacaacaattgtagttgcacacagactttctaccattaggaatgcagatgttatagctgttgttcaa 12520179  T
Q  101 ggagggagcattgtggaaactggaattcacgaggaactcatttccaactcaaacagtgtatatgcatctcttgttcaa 178  Q
    |||||||| |||||||| || || |  || ||  ||||||| |||||  |||  ||||| ||||||||||||||||||    
T  12520180 ggagggaggattgtggagaccggtaaccatgaaaaactcatgtccaatccaactagtgtttatgcatctcttgttcaa 12520257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 541 - 599
Target Start/End: Complemental strand, 35960438 - 35960381
Alignment:
Q  541 aggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||||||||| ||||| ||| |||||||| |||||||||||||||||||||||    
T  35960438 aggatagcttatgaaatcaacttatagtttatatg-aaatagtttgactttattttatc 35960381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 519 - 599
Target Start/End: Original strand, 28586789 - 28586869
Alignment:
Q  519 agcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||| || | | |||||||||||||  | |||||| || ||| |||||||||||| |||||||||||||||||||    
T  28586789 agcttatttcgataagctctctaggatagctcgtcaaaacagcttataatttatatgaaaacagtttgactttattttatc 28586869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 543 - 599
Target Start/End: Original strand, 41277397 - 41277453
Alignment:
Q  543 gatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||||||||||||||  ||  ||||||||||| |||||||||||||||||||    
T  41277397 gatagcttatgaaaacaacttttaacttatatgaaaacagtttgactttattttatc 41277453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 541 - 599
Target Start/End: Complemental strand, 14295531 - 14295473
Alignment:
Q  541 aggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||||| ||||||| || |||  ||||||||||| |||||||||||||||||||    
T  14295531 aggatagcttacgaaaacagcttatagcttatatgaaaacagtttgactttattttatc 14295473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 541 - 599
Target Start/End: Original strand, 38047900 - 38047958
Alignment:
Q  541 aggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||||||||||||| |  ||| | |||||||||||| |||||||||||||||||    
T  38047900 aggatagcttatgaaaacagcatatagtatatatgaaaataatttgactttattttatc 38047958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 522 - 599
Target Start/End: Original strand, 15003540 - 15003617
Alignment:
Q  522 ttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||| | | |||| ||||||||||||||||| ||| |||  ||||||||| | ||||||| |||||||||||    
T  15003540 ttatttccataagctctcttggatagcttatgaaaaccacttatagcttatatgaagagagtttgattttattttatc 15003617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 546 - 599
Target Start/End: Original strand, 39823171 - 39823224
Alignment:
Q  546 agcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||||||||||  ||  |||||||||| ||||||||||||||||||||    
T  39823171 agcttatgaaaacaacttgtagcttatatgaaagtagtttgactttattttatc 39823224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 543 - 599
Target Start/End: Complemental strand, 26516423 - 26516367
Alignment:
Q  543 gatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||||||||||  | |||  |||||||||| ||||||||||||||||||||    
T  26516423 gatagcttatgaaaacagtttataacttatatgaaagtagtttgactttattttatc 26516367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 543 - 599
Target Start/End: Complemental strand, 34205262 - 34205206
Alignment:
Q  543 gatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||||||||||||| |||  |||||| |||||| |||||||||| ||||||    
T  34205262 gatagcttatgaaaacaacttatagcttatataaaaataatttgactttactttatc 34205206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 519 - 599
Target Start/End: Original strand, 38831480 - 38831559
Alignment:
Q  519 agcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||||||||| |  |||| |||||||||  ||||||||| ||  |||||| ||||| |||||||||||||||||||    
T  38831480 agcttatttccatcagctatctatgatagcttaa-aaaacaacttatcatttatacgaaaacagtttgactttattttatc 38831559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 516 - 599
Target Start/End: Complemental strand, 8481268 - 8481185
Alignment:
Q  516 tttagcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||||||||| | ||||| | |||| |||||||||||| || ||| | ||||| ||| | |||| |||||||||||||    
T  8481268 tttagcttatttccataagccctcaaagataacttatgaaaacagcttatagtgtatataaaatttgtttaactttattttatc 8481185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 544 - 595
Target Start/End: Original strand, 18704084 - 18704135
Alignment:
Q  544 atagcttatgaaaacaactaatactttatatgaaaatagtttgactttattt 595  Q
    ||||||||||||||||||| |||  |||||| ||||||| ||||||||||||    
T  18704084 atagcttatgaaaacaacttatagcttatataaaaatagcttgactttattt 18704135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 549 - 599
Target Start/End: Original strand, 32059642 - 32059692
Alignment:
Q  549 ttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||||| || |||  ||||||||||| |||||||||||||||||||    
T  32059642 ttatgaaaacagcttatagcttatatgaaaacagtttgactttattttatc 32059692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 569 - 599
Target Start/End: Original strand, 35135735 - 35135765
Alignment:
Q  569 ttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||||||||||||||||||||||||    
T  35135735 ttatatgaaaatagtttgactttattttatc 35135765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 505 - 559
Target Start/End: Complemental strand, 36638808 - 36638754
Alignment:
Q  505 cataagctttctttagcttatttccatcatccctctaggatagcttatgaaaaca 559  Q
    |||||||||| || ||||||||||||| | | |||||||||| ||||||||||||    
T  36638808 cataagcttttttcagcttatttccataagctctctaggataacttatgaaaaca 36638754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 569 - 599
Target Start/End: Original strand, 37063147 - 37063177
Alignment:
Q  569 ttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||||||||||||||||||||||||    
T  37063147 ttatatgaaaatagtttgactttattttatc 37063177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 547 - 597
Target Start/End: Original strand, 39257438 - 39257487
Alignment:
Q  547 gcttatgaaaacaactaatactttatatgaaaatagtttgactttatttta 597  Q
    |||||||||||||||| ||| ||||||||||||  ||||||||||||||||    
T  39257438 gcttatgaaaacaacttatagtttatatgaaaa-ggtttgactttatttta 39257487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 569 - 599
Target Start/End: Complemental strand, 39750140 - 39750110
Alignment:
Q  569 ttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||||||||||||||||||||||||    
T  39750140 ttatatgaaaatagtttgactttattttatc 39750110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 544 - 584
Target Start/End: Original strand, 15557295 - 15557335
Alignment:
Q  544 atagcttatgaaaacaactaatactttatatgaaaatagtt 584  Q
    |||||||||||||||||||||||  ||||| ||||||||||    
T  15557295 atagcttatgaaaacaactaatagcttataagaaaatagtt 15557335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 596
Target Start/End: Complemental strand, 41017745 - 41017697
Alignment:
Q  548 cttatgaaaacaactaatactttatatgaaaatagtttgactttatttt 596  Q
    ||||||||||||||| |||  ||||| |||||| |||||||||||||||    
T  41017745 cttatgaaaacaacttatagcttataggaaaatggtttgactttatttt 41017697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 506 - 599
Target Start/End: Complemental strand, 2117463 - 2117370
Alignment:
Q  506 ataagctttctttagcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||| | ||||||||||||| || | | |||||||||| ||||||||||||||| |||  ||||||||||||||||||||||| |||||||    
T  2117463 ataagctgtttttagcttatttcaataagctctctaggataacttatgaaaacaacttatagattatatgaaaatagtttgactttgttttatc 2117370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 519 - 599
Target Start/End: Original strand, 281871 - 281951
Alignment:
Q  519 agcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||||||| | | ||||||||||||||||||| ||| || |||  ||||||||||| |  ||||||||||||||||    
T  281871 agcttatttccatgagctctctaggatagcttatgaacacagcttatagcttatatgaaaacaagttgactttattttatc 281951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 543 - 599
Target Start/End: Complemental strand, 1403019 - 1402963
Alignment:
Q  543 gatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||||||||||| | |||  ||||||||||||||||| |||||||||||||    
T  1403019 gatagcttatgaaaacaatttatagcttatatgaaaatagtttaactttattttatc 1402963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 545 - 599
Target Start/End: Original strand, 2027455 - 2027509
Alignment:
Q  545 tagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||| |||| || |||  |||||||||||||||||||||||||||||||    
T  2027455 tagcttatgagaacagcttataggttatatgaaaatagtttgactttattttatc 2027509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 516 - 598
Target Start/End: Complemental strand, 12757604 - 12757522
Alignment:
Q  516 tttagcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttat 598  Q
    ||||||||||||  || | | ||||| |||| |||| |||||||||| |||  |||||||||| |||||||||||||||||||    
T  12757604 tttagcttatttttattagctctctatgataacttacgaaaacaactcataacttatatgaaagtagtttgactttattttat 12757522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 541 - 599
Target Start/End: Original strand, 28660805 - 28660863
Alignment:
Q  541 aggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||| |||||||||||| | ||| |||||||||||||| ||| |||||||||||||    
T  28660805 aggatagtttatgaaaacaatttataatttatatgaaaataatttaactttattttatc 28660863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 542 - 599
Target Start/End: Complemental strand, 4006738 - 4006681
Alignment:
Q  542 ggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||||||||||||||| |||  |||||| |||| | |||||||||||||||||    
T  4006738 ggatagcttatgaaaacaacttatagcttatataaaaacaatttgactttattttatc 4006681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 537 - 598
Target Start/End: Original strand, 14656286 - 14656347
Alignment:
Q  537 ctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttat 598  Q
    ||||| |||| |||| |||||||||| |||  |||||||||| |||||||||||||||||||    
T  14656286 ctctatgataacttacgaaaacaactcataacttatatgaaagtagtttgactttattttat 14656347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 539 - 599
Target Start/End: Original strand, 1280911 - 1280971
Alignment:
Q  539 ctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||| |||| ||| |||||||||  |||||||||||||| || |||||||||||||    
T  1280911 ctaggatagtttatcaaatcaactaataacttatatgaaaatagctttactttattttatc 1280971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 597
Target Start/End: Complemental strand, 5623179 - 5623125
Alignment:
Q  543 gatagcttatgaaaacaactaatactttatatgaaaatagtttgactttatttta 597  Q
    |||||||||||||||||||| ||| ||||||||||||   |||| ||||||||||    
T  5623179 gatagcttatgaaaacaacttatagtttatatgaaaactatttggctttatttta 5623125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 549 - 598
Target Start/End: Original strand, 10452413 - 10452462
Alignment:
Q  549 ttatgaaaacaactaatactttatatgaaaatagtttgactttattttat 598  Q
    ||||| |||||||| |||  ||||||||||||||||||| ||||||||||    
T  10452413 ttatggaaacaacttatagcttatatgaaaatagtttgattttattttat 10452462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 551 - 599
Target Start/End: Original strand, 3217245 - 3217293
Alignment:
Q  551 atgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||| |||||| |  ||||||||||||| |||||||||||||||||    
T  3217245 atgaaaaaaactaaaatcttatatgaaaataatttgactttattttatc 3217293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 519 - 599
Target Start/End: Original strand, 32386586 - 32386666
Alignment:
Q  519 agcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||| ||| | | ||| |||||| || |||||||||||  |||| ||||||||||| | |||||| ||||||||||    
T  32386586 agcttattttcataagctctccaggataactaatgaaaacaacgtataccttatatgaaaacaatttgaccttattttatc 32386666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 519 - 598
Target Start/End: Complemental strand, 49219186 - 49219107
Alignment:
Q  519 agcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttat 598  Q
    ||||||||||||| ||| || || ||||| |||||||||||||| |||  ||||||||||||| ||||||||||||||||    
T  49219186 agcttatttccataatctctttaagatagtttatgaaaacaacttatagcttatatgaaaataatttgactttattttat 49219107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 519 - 598
Target Start/End: Original strand, 30207594 - 30207672
Alignment:
Q  519 agcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttat 598  Q
    ||||||||||||| ||| ||||| | |||||||||||||||||| |||  ||||||||||| ||||||| ||||||||||    
T  30207594 agcttatttccataatctctctaaggtagcttatgaaaacaacttatagcttatatgaaaacagtttga-tttattttat 30207672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 516 - 599
Target Start/End: Original strand, 28581930 - 28582013
Alignment:
Q  516 tttagcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||| ||||||| | | | ||||| |||||||| ||||||||||| |||   ||| ||||||||||||||||||||||||||    
T  28581930 tttagcatatttccttaagctctctatgatagcttttgaaaacaactcataacatatctgaaaatagtttgactttattttatc 28582013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 544 - 598
Target Start/End: Complemental strand, 24444060 - 24444006
Alignment:
Q  544 atagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttat 598  Q
    ||||||||||||||||||| |||  |||||||||||| |||||| ||||||||||    
T  24444060 atagcttatgaaaacaacttatagcttatatgaaaattgtttgaatttattttat 24444006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 545 - 599
Target Start/End: Complemental strand, 49086010 - 49085956
Alignment:
Q  545 tagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||||||||||| |||  || ||||||||||||||||| ||||||||||    
T  49086010 tagcttatgaaaacaacttataacttgtatgaaaatagtttgacattattttatc 49085956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 543 - 596
Target Start/End: Original strand, 2980513 - 2980566
Alignment:
Q  543 gatagcttatgaaaacaactaatactttatatgaaaatagtttgactttatttt 596  Q
    |||||||||||| ||||||| |||  || |||||||||||||||||||||||||    
T  2980513 gatagcttatgagaacaacttataacttgtatgaaaatagtttgactttatttt 2980566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 505 - 589
Target Start/End: Original strand, 26747411 - 26747496
Alignment:
Q  505 cataagctttctttagcttatttccatcatccctctaggatagcttatgaaaacaactaat-actttatatgaaaatagtttgact 589  Q
    |||||||||| |||||||||||||||| |   || ||||||| || |||||||||||| || |  |||||||||||||||||||||    
T  26747411 cataagctttttttagcttatttccataagttctttaggataactaatgaaaacaacttataagcttatatgaaaatagtttgact 26747496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 522 - 593
Target Start/End: Complemental strand, 18020016 - 18019944
Alignment:
Q  522 ttatttccatcatccctctaggatagcttatgaaaacaact-aatactttatatgaaaatagtttgactttat 593  Q
    |||||||||| | | |||||| ||||||||||||||||||| |  | |||||||||||| |||||||||||||    
T  18020016 ttatttccataaactctctagcatagcttatgaaaacaactcacaagtttatatgaaaacagtttgactttat 18019944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 519 - 599
Target Start/End: Complemental strand, 24929540 - 24929460
Alignment:
Q  519 agcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||||||| | | |||||| | || |||||||||||||| |||  || |||||||| |||| ||||||||||||||    
T  24929540 agcttatttccataagctctctagtagagtttatgaaaacaacttatagcttttatgaaaacagttagactttattttatc 24929460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 544 - 599
Target Start/End: Complemental strand, 4071904 - 4071849
Alignment:
Q  544 atagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||| | ||||||| |||  ||||||||||||| |||||||||||||||||    
T  4071904 atagcttatcataacaacttatagcttatatgaaaataatttgactttattttatc 4071849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 516 - 587
Target Start/End: Complemental strand, 42866118 - 42866047
Alignment:
Q  516 tttagcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttga 587  Q
    ||||||||| |||||| | | ||| |||||||||||||||||||||| |||  |||||| |||| |||||||    
T  42866118 tttagcttacttccataagctctcaaggatagcttatgaaaacaacttatagcttatataaaaacagtttga 42866047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 516 - 599
Target Start/End: Complemental strand, 52735172 - 52735089
Alignment:
Q  516 tttagcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||||||||| | | ||  | ||||||||| |||||||||  |||  |||||||||| || |||||||||||||||||    
T  52735172 tttagcttatttccataagctcttcaagatagcttacgaaaacaacatataacttatatgaaagtaatttgactttattttatc 52735089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 541 - 599
Target Start/End: Complemental strand, 10192309 - 10192251
Alignment:
Q  541 aggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||| ||||||||||| |||  ||||||||||| | |||||||||||| ||||    
T  10192309 aggatagcttttgaaaacaacttataacttatatgaaaacaatttgactttattctatc 10192251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 516 - 598
Target Start/End: Complemental strand, 21157818 - 21157736
Alignment:
Q  516 tttagcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttat 598  Q
    |||||||||||||||| | | ||  |||||||| |||||||||| || |||  ||| ||||||| |||||||||||| |||||    
T  21157818 tttagcttatttccataagctcttcaggatagcatatgaaaacatcttatagcttacatgaaaacagtttgactttagtttat 21157736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 569 - 599
Target Start/End: Complemental strand, 32724116 - 32724086
Alignment:
Q  569 ttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||||||||||||||||||||||||    
T  32724116 ttatatgaaaatagtttgactttattttatc 32724086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 553 - 599
Target Start/End: Original strand, 42321936 - 42321982
Alignment:
Q  553 gaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||| ||| |||||||||||| | |||||||||||||||||    
T  42321936 gaaaacaacttataatttatatgaaaacaatttgactttattttatc 42321982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 545 - 595
Target Start/End: Original strand, 55870390 - 55870440
Alignment:
Q  545 tagcttatgaaaacaactaatactttatatgaaaatagtttgactttattt 595  Q
    |||||||||||||||||| |||  |||| |||||| |||||||||||||||    
T  55870390 tagcttatgaaaacaacttatagcttatgtgaaaacagtttgactttattt 55870440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 546 - 599
Target Start/End: Original strand, 24160545 - 24160598
Alignment:
Q  546 agcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||||||||||| |||  ||| ||||||||||||||| ||||| |||||    
T  24160545 agcttatgaaaacaacttatagcttacatgaaaatagtttgaatttatattatc 24160598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 568 - 597
Target Start/End: Complemental strand, 36734891 - 36734862
Alignment:
Q  568 tttatatgaaaatagtttgactttatttta 597  Q
    ||||||||||||||||||||||||||||||    
T  36734891 tttatatgaaaatagtttgactttatttta 36734862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 544 - 597
Target Start/End: Original strand, 55372390 - 55372443
Alignment:
Q  544 atagcttatgaaaacaactaatactttatatgaaaatagtttgactttatttta 597  Q
    ||||||||||||||| ||| |||  | |||||| ||||||||||||||||||||    
T  55372390 atagcttatgaaaactacttatagctcatatgataatagtttgactttatttta 55372443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 595
Target Start/End: Complemental strand, 927499 - 927447
Alignment:
Q  543 gatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattt 595  Q
    ||||||||||| |||||| | |||  ||||||||||| |||||||||||||||    
T  927499 gatagcttatgcaaacaagttatagcttatatgaaaacagtttgactttattt 927447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 599
Target Start/End: Complemental strand, 2996596 - 2996540
Alignment:
Q  543 gatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||||||||||||| |||  |||||| |||| | ||||||| |||||||||    
T  2996596 gatagcttatgaaaacaacttataacttatataaaaacaatttgactgtattttatc 2996540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 599
Target Start/End: Original strand, 54325084 - 54325140
Alignment:
Q  543 gatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||| |||||| | || |||  ||||||||||| |||||||||||||||||||    
T  54325084 gatagcttttgaaaatagcttatagcttatatgaaaacagtttgactttattttatc 54325140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 541 - 599
Target Start/End: Original strand, 37292392 - 37292450
Alignment:
Q  541 aggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||||| ||||||||||||||  ||||||||||||||||| |||||||||||||    
T  37292392 aggatagcttaagaaaacaactaatagcttatatgaaaatagttttactttattttatc 37292450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 519 - 599
Target Start/End: Original strand, 17952723 - 17952804
Alignment:
Q  519 agcttatttccat-catccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||||||| ||  |||| ||||||||||||||||||| ||  ||  |||||||||||||||||||||||||||||||    
T  17952723 agcttatttccatgcactcctccaggatagcttatgaaaacatcttgtagcttatatgaaaatagtttgactttattttatc 17952804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 543 - 599
Target Start/End: Original strand, 5043607 - 5043663
Alignment:
Q  543 gatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||||||||||||||  ||  ||||||||||| |||||||||||||||||||    
T  5043607 gatagcttatgaaaacaacttctagcttatatgaaaacagtttgactttattttatc 5043663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 543 - 599
Target Start/End: Complemental strand, 11513921 - 11513865
Alignment:
Q  543 gatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||||||||||||| |||  ||||||||||| | |||||||||||||||||    
T  11513921 gatagcttatgaaaacaacttatagcttatatgaaaacaatttgactttattttatc 11513865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 519 - 599
Target Start/End: Complemental strand, 32694259 - 32694179
Alignment:
Q  519 agcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||||||  |||  |||||||||||||||| |||||||| |||  |||||| |||||||| ||| |||||||||||    
T  32694259 agcttatttccacaatctatctaggatagcttatgcaaacaacttataaattatataaaaatagtctgattttattttatc 32694179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 505 - 599
Target Start/End: Original strand, 22681194 - 22681288
Alignment:
Q  505 cataagctttctttagcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||| | |||||||||||||||| |   ||||||||||| ||||||||||| || |||  ||||||||||| | |||| |||| |||||||    
T  22681194 cataagctgtttttagcttatttccataagttctctaggatagattatgaaaacagcttatagcttatatgaaaacaatttggctttgttttatc 22681288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 521 - 599
Target Start/End: Complemental strand, 28933869 - 28933791
Alignment:
Q  521 cttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||| |||| | |||||||||||||||||||||||| | |||  ||| ||||||||| ||||| || ||||||||    
T  28933869 cttatttctatcagctctctaggatagcttatgaaaacaatttataacttaaatgaaaataatttgatttgattttatc 28933791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 541 - 599
Target Start/End: Complemental strand, 33256765 - 33256707
Alignment:
Q  541 aggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||| ||||||||||||  || ||| |||||||||||| |||||||||||||||||||    
T  33256765 aggatggcttatgaaaactgcttatagtttatatgaaaacagtttgactttattttatc 33256707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 537 - 599
Target Start/End: Complemental strand, 33942179 - 33942117
Alignment:
Q  537 ctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||| ||| |||||||||||||||| |||  ||| ||||||| |||||||||||||||||||    
T  33942179 ctctatgatggcttatgaaaacaacttatagcttacatgaaaacagtttgactttattttatc 33942117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 549 - 598
Target Start/End: Complemental strand, 3102710 - 3102661
Alignment:
Q  549 ttatgaaaacaactaatactttatatgaaaatagtttgactttattttat 598  Q
    ||||||||||| ||||||  |||||| |||||||||||||||||||||||    
T  3102710 ttatgaaaacagctaatagattatataaaaatagtttgactttattttat 3102661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 519 - 599
Target Start/End: Original strand, 10198503 - 10198581
Alignment:
Q  519 agcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||||||| ||| ||||||||||| |||| |||||| |  |||  ||||||||||||||  |||||||||||||||    
T  10198503 agcttatttccataatctctctaggatagattataaaaacagcctatatcttatatgaaaatag--tgactttattttatc 10198581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 522 - 593
Target Start/End: Original strand, 3059300 - 3059372
Alignment:
Q  522 ttatttccatcatccctctaggatagcttatgaaaacaact-aatactttatatgaaaatagtttgactttat 593  Q
    |||||||||| | | |||||| ||||||||||||||||||| |  | |||||||||||| |||||||||||||    
T  3059300 ttatttccataaactctctagcatagcttatgaaaacaactcacaagtttatatgaaaacagtttgactttat 3059372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 543 - 599
Target Start/End: Complemental strand, 14666571 - 14666515
Alignment:
Q  543 gatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||| ||||||||||| |||  ||||||||||  |||||||||||||||||||    
T  14666571 gatagcttgtgaaaacaacttataacttatatgaaatcagtttgactttattttatc 14666515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 505 - 597
Target Start/End: Original strand, 17221549 - 17221641
Alignment:
Q  505 cataagctttctttagcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttatttta 597  Q
    ||||| |||| |||||||||||||| | |   |||| ||||||||||||||||||  |||||  |||||||| || | |||||||||||||||    
T  17221549 cataaactttttttagcttatttccgtaagatctctcggatagcttatgaaaacacttaatagcttatatgagaacaatttgactttatttta 17221641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 543 - 599
Target Start/End: Original strand, 36863672 - 36863728
Alignment:
Q  543 gatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||||||||||| | |||  |||||| ||||| ||||||||||||||||||    
T  36863672 gatagcttatgaaaacaatttataacttatataaaaattgtttgactttattttatc 36863728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 516 - 599
Target Start/End: Original strand, 6993744 - 6993827
Alignment:
Q  516 tttagcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||||| ||| | | ||| || ||||||||||||||||||  |||  ||||||||| ||| |||||| ||||||||||    
T  6993744 tttagcttattttcataagctctcaagcatagcttatgaaaacaacctatagcttatatgaatataatttgaccttattttatc 6993827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 556 - 599
Target Start/End: Original strand, 31740019 - 31740062
Alignment:
Q  556 aacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||| |||  |||||||||||||||||||||||||||||||    
T  31740019 aacaacttatagcttatatgaaaatagtttgactttattttatc 31740062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 543 - 598
Target Start/End: Complemental strand, 37053617 - 37053562
Alignment:
Q  543 gatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttat 598  Q
    ||||||| ||||||| |||| |||  ||||||||||| ||||||||||||||||||    
T  37053617 gatagctaatgaaaaaaacttataacttatatgaaaacagtttgactttattttat 37053562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 541 - 599
Target Start/End: Complemental strand, 35485942 - 35485884
Alignment:
Q  541 aggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||||| ||||||||| |||  |||||   |||||||||||||||||||||||    
T  35485942 aggatagcttataaaaacaacttatagcttataatgaaatagtttgactttattttatc 35485884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 569 - 598
Target Start/End: Original strand, 1160817 - 1160846
Alignment:
Q  569 ttatatgaaaatagtttgactttattttat 598  Q
    ||||||||||||||||||||||||||||||    
T  1160817 ttatatgaaaatagtttgactttattttat 1160846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 550 - 599
Target Start/End: Complemental strand, 4550793 - 4550744
Alignment:
Q  550 tatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||||||| ||| |||||||||||| || ||||| ||||||||||    
T  4550793 tatgaaaacaacttatagtttatatgaaaacagcttgacgttattttatc 4550744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 541 - 594
Target Start/End: Complemental strand, 9886337 - 9886285
Alignment:
Q  541 aggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttatt 594  Q
    ||||||||||| |||||||||| |||  ||||||| ||||||||||||||||||    
T  9886337 aggatagcttaggaaaacaacttatagcttatatg-aaatagtttgactttatt 9886285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 541 - 590
Target Start/End: Complemental strand, 37276771 - 37276722
Alignment:
Q  541 aggatagcttatgaaaacaactaatactttatatgaaaatagtttgactt 590  Q
    |||||| ||||||||||||||| |||  ||||||||||| ||||||||||    
T  37276771 aggataacttatgaaaacaacttataacttatatgaaaacagtttgactt 37276722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 535 - 599
Target Start/End: Complemental strand, 5940945 - 5940881
Alignment:
Q  535 ccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||||||| ||||||||||||||| ||  | |||| ||||| ||||| |||| |||||||    
T  5940945 ccctctaggataggttatgaaaacaactagtagctcatataaaaattgtttggcttttttttatc 5940881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 599
Target Start/End: Complemental strand, 6988138 - 6988082
Alignment:
Q  543 gatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||||||||||||| |||  |  || ||||||| |||||||||||||||||    
T  6988138 gatagcttatgaaaacaacttataactagtaagaaaataatttgactttattttatc 6988082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 516 - 599
Target Start/End: Original strand, 7103502 - 7103586
Alignment:
Q  516 tttagcttatttccatcatccctctaggatagcttatgaaaa-caactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||||| ||  | | ||||| ||||||||||||||| || || |||  |||||| |||| |||||||||||||||||||    
T  7103502 tttagcttattttcacaaactctctaagatagcttatgaaaaacagcttatagcttatattaaaacagtttgactttattttatc 7103586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 599
Target Start/End: Complemental strand, 10143195 - 10143139
Alignment:
Q  543 gatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||||||||| |||| |||  |||||| |||| |||||||||| ||||||||    
T  10143195 gatagcttatgaaaaaaacttatagcttatataaaaacagtttgacttaattttatc 10143139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 538 - 598
Target Start/End: Complemental strand, 37766826 - 37766766
Alignment:
Q  538 tctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttat 598  Q
    |||| ||||||| | |||||||||| ||| |||||| ||||| | ||||||||||||||||    
T  37766826 tctatgatagctcaggaaaacaacttatagtttatacgaaaacattttgactttattttat 37766766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 541 - 597
Target Start/End: Complemental strand, 39983367 - 39983311
Alignment:
Q  541 aggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttatttta 597  Q
    |||||||||||||||||||||| |||  ||||||||||||  ||| | |||||||||    
T  39983367 aggatagcttatgaaaacaacttatagcttatatgaaaattattttattttatttta 39983311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 519 - 594
Target Start/End: Complemental strand, 23721553 - 23721478
Alignment:
Q  519 agcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttatt 594  Q
    ||||||||||||| | | | | |||||||||||| ||||||||| ||| |||| ||||||||||||||||||||||    
T  23721553 agcttatttccataagcgcacaaggatagcttataaaaacaacttatagtttaaatgaaaatagtttgactttatt 23721478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 545 - 599
Target Start/End: Original strand, 5006558 - 5006612
Alignment:
Q  545 tagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||||||||| | |||| ||||||||||| |||||||||||||||||||    
T  5006558 tagcttatgaaaacaatttataccttatatgaaaacagtttgactttattttatc 5006612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 546 - 599
Target Start/End: Original strand, 9527140 - 9527193
Alignment:
Q  546 agcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||||||||||| ||| |||||||||||| |||||||||||||| ||||    
T  9527140 agcttatgaaaacaacttatagtttatatgaaaacagtttgactttattatatc 9527193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 541 - 598
Target Start/End: Original strand, 17989068 - 17989125
Alignment:
Q  541 aggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttat 598  Q
    |||| ||||||||||||||| | ||| |||||||||||| ||||||||||||||||||    
T  17989068 aggagagcttatgaaaacaaattatagtttatatgaaaacagtttgactttattttat 17989125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 519 - 599
Target Start/End: Original strand, 24363624 - 24363704
Alignment:
Q  519 agcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||||||| | | ||| |||||||||||||||||||||| |||   | ||||||||||| |||||| |||||||||    
T  24363624 agcttatttccataacctctccaggatagcttatgaaaacaacttataacctgtatgaaaatagattgactctattttatc 24363704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 505 - 599
Target Start/End: Complemental strand, 38010775 - 38010681
Alignment:
Q  505 cataagctttctttagcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||| | |||||||||||||||| |   ||||||||||| ||||||||||| || |||  ||||||||||| | |||| |||| |||||||    
T  38010775 cataagctgtttttagcttatttccataagttctctaggatagattatgaaaacagcttatagcttatatgaaaacaatttggctttgttttatc 38010681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 545 - 599
Target Start/End: Complemental strand, 47004108 - 47004054
Alignment:
Q  545 tagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||||||||| || ||| || |||| ||||||||||||||||||||||||    
T  47004108 tagcttatgaaaacagcttatagttcatataaaaatagtttgactttattttatc 47004054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 537 - 599
Target Start/End: Original strand, 47046149 - 47046211
Alignment:
Q  537 ctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||||||||||||||||||||   |  ||||||||||| | |||||||||||||||||    
T  47046149 ctctaggatagcttatgaaaacaactcggagcttatatgaaaacaatttgactttattttatc 47046211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 543 - 599
Target Start/End: Complemental strand, 11208472 - 11208416
Alignment:
Q  543 gatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||||||||||||  ||| ||||||||||||  |||||| |||||||||||    
T  11208472 gatagcttatgaaaacaacatatagtttatatgaaaacggtttgagtttattttatc 11208416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 543 - 599
Target Start/End: Original strand, 45777218 - 45777274
Alignment:
Q  543 gatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||| || |||||||||| ||| |||||||||||| |||||||||| ||||||||    
T  45777218 gatagcctacgaaaacaacttatagtttatatgaaaacagtttgacttaattttatc 45777274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 540 - 599
Target Start/End: Original strand, 3501010 - 3501069
Alignment:
Q  540 taggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||| | ||||| |||||| ||| |||||||||||||  |||||||||||||||||    
T  3501010 taggatagttaatgaatacaacttatattttatatgaaaatgatttgactttattttatc 3501069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 540 - 599
Target Start/End: Complemental strand, 31338534 - 31338475
Alignment:
Q  540 taggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||| ||||| |||||||| |||  |||||| |||| |||||||||||||||||||    
T  31338534 taggatagtttatggaaacaacttataacttatataaaaacagtttgactttattttatc 31338475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 545 - 599
Target Start/End: Complemental strand, 1417285 - 1417231
Alignment:
Q  545 tagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||||||||||| ||   ||||||||||| | |||||||||||||||||    
T  1417285 tagcttatgaaaacaacttattgcttatatgaaaacaatttgactttattttatc 1417231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 537 - 599
Target Start/End: Complemental strand, 3468643 - 3468581
Alignment:
Q  537 ctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||||| ||||||||| | || |||  ||||| |||||||||||||||| ||||||||    
T  3468643 ctctaggatagattatgaaaaaagcttataacttatacgaaaatagtttgacttcattttatc 3468581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 536 - 594
Target Start/End: Original strand, 5369731 - 5369789
Alignment:
Q  536 cctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttatt 594  Q
    ||||| |||||||||||||||||| || |||   |||||||||| ||||||||||||||    
T  5369731 cctctgggatagcttatgaaaacagcttatagcatatatgaaaacagtttgactttatt 5369789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 544 - 598
Target Start/End: Original strand, 28340444 - 28340498
Alignment:
Q  544 atagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttat 598  Q
    ||||||| ||||||||||| |||  ||| ||||||| ||||||||||||||||||    
T  28340444 atagcttctgaaaacaacttataacttacatgaaaacagtttgactttattttat 28340498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 541 - 599
Target Start/End: Original strand, 40689031 - 40689089
Alignment:
Q  541 aggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||||||||| ||| || |||  ||||||||||||| ||| |||||||||||||    
T  40689031 aggatagcttatgaacacagcttatagcttatatgaaaataatttaactttattttatc 40689089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 540 - 585
Target Start/End: Original strand, 25558235 - 25558280
Alignment:
Q  540 taggatagcttatgaaaacaactaatactttatatgaaaatagttt 585  Q
    ||||||| ||||||||||||||| |||  |||||||||||||||||    
T  25558235 taggataacttatgaaaacaacttatagcttatatgaaaatagttt 25558280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 540 - 585
Target Start/End: Original strand, 25558433 - 25558478
Alignment:
Q  540 taggatagcttatgaaaacaactaatactttatatgaaaatagttt 585  Q
    ||||||| ||||||||||||||| |||  |||||||||||||||||    
T  25558433 taggataacttatgaaaacaacttatagcttatatgaaaatagttt 25558478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 599
Target Start/End: Complemental strand, 29363562 - 29363485
Alignment:
Q  522 ttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||| | | ||| |||||| ||||||| |||| || |||  | ||||||||| |||||||||||||||||||    
T  29363562 ttatttccataagctctccaggataacttatgataacagcttataactaatatgaaaacagtttgactttattttatc 29363485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 546 - 599
Target Start/End: Complemental strand, 31002781 - 31002728
Alignment:
Q  546 agcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||| |||||| || |||  ||||||||||||| |||||||||||||||||    
T  31002781 agcttatcaaaacagcttatagcttatatgaaaatattttgactttattttatc 31002728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 505 - 585
Target Start/End: Original strand, 15075094 - 15075174
Alignment:
Q  505 cataagctttctttagcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagttt 585  Q
    |||||||| | |||||||||||||||| | | ||||| | ||| ||||||||| |||| |||  |||||| ||||||||||    
T  15075094 cataagctgtttttagcttatttccataagctctctaaggtagtttatgaaaataacttataacttatataaaaatagttt 15075174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 592
Target Start/End: Complemental strand, 24909682 - 24909638
Alignment:
Q  548 cttatgaaaacaactaatactttatatgaaaatagtttgacttta 592  Q
    ||||||||||||||| |||  ||||||||||||| ||||||||||    
T  24909682 cttatgaaaacaacttatagcttatatgaaaataatttgacttta 24909638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 599
Target Start/End: Original strand, 30456497 - 30456553
Alignment:
Q  543 gatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||| |||||||||| ||| |||  ||||||||||| | |||||||||||||||||    
T  30456497 gatagtttatgaaaaccacttataacttatatgaaaacaatttgactttattttatc 30456553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 546 - 599
Target Start/End: Original strand, 23530234 - 23530288
Alignment:
Q  546 agcttatgaaaacaactaatactttatatg-aaaatagtttgactttattttatc 599  Q
    ||||||||||||||||| |||||||||||| |||||| |||||||||||||||||    
T  23530234 agcttatgaaaacaacttatactttatatgaaaaataatttgactttattttatc 23530288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 544 - 599
Target Start/End: Original strand, 36783382 - 36783437
Alignment:
Q  544 atagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||||||||| |||||| |||||||||||| | ||| |||||||||||||    
T  36783382 atagcttatgaaaacagctaatagtttatatgaaaacaattttactttattttatc 36783437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 516 - 599
Target Start/End: Original strand, 40122773 - 40122855
Alignment:
Q  516 tttagcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||||||||| | |  | ||||||||||||| ||||||||| |||  || |||||||| |||||||||||||||||||    
T  40122773 tttagcttatttccattaactttttaggatagcttataaaaacaacttatagctt-tatgaaaacagtttgactttattttatc 40122855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 505 - 579
Target Start/End: Original strand, 22214668 - 22214742
Alignment:
Q  505 cataagctttctttagcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaa 579  Q
    |||||||| | || ||||||||||| | ||  |||||||||||||||||||||||||| |||  |||||||||||    
T  22214668 cataagctgttttcagcttatttccgtaatgtctctaggatagcttatgaaaacaacttataggttatatgaaaa 22214742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 521 - 598
Target Start/End: Complemental strand, 22031241 - 22031164
Alignment:
Q  521 cttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttat 598  Q
    ||||||||||||||| ||  |  ||||||||||||||||| | | | |||||||||||| |||||| |||||||||||    
T  22031241 cttatttccatcatctcttcaaaatagcttatgaaaacaatttacattttatatgaaaacagtttggctttattttat 22031164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 544 - 597
Target Start/End: Complemental strand, 28306180 - 28306127
Alignment:
Q  544 atagcttatgaaaacaactaatactttatatgaaaatagtttgactttatttta 597  Q
    |||||||||||||||||||  ||  ||||||||||| |||||||||||||||||    
T  28306180 atagcttatgaaaacaacttgtaacttatatgaaaacagtttgactttatttta 28306127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 544 - 596
Target Start/End: Original strand, 10540540 - 10540592
Alignment:
Q  544 atagcttatgaaaacaactaatactttatatgaaaatagtttgactttatttt 596  Q
    ||||||||||||||||||| ||| ||||||| ||| || ||||||||||||||    
T  10540540 atagcttatgaaaacaacttatagtttatataaaattaatttgactttatttt 10540592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 519 - 599
Target Start/End: Original strand, 24887306 - 24887386
Alignment:
Q  519 agcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||| |||| | | ||| ||||||||||||||||||| ||  ||  ||||||||| | |||||||||||||||||||    
T  24887306 agcttattcccataagctctccaggatagcttatgaaaacagcttttagcttatatgaatacagtttgactttattttatc 24887386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 519 - 599
Target Start/End: Complemental strand, 38462328 - 38462248
Alignment:
Q  519 agcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||||||| | |  ||| ||||||||||||||||||  | |||   |||||||||| |||||||||||||||||||    
T  38462328 agcttatttccataagctatcttggatagcttatgaaaacagtttatagcatatatgaaaacagtttgactttattttatc 38462248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 544 - 599
Target Start/End: Complemental strand, 1816605 - 1816550
Alignment:
Q  544 atagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||||||||||||| |||  |||||  |||| |||||||||||||||||||    
T  1816605 atagcttatgaaaacaacttatatcttatacaaaaacagtttgactttattttatc 1816550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 544 - 599
Target Start/End: Original strand, 24235731 - 24235786
Alignment:
Q  544 atagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||||||||||||| |||  ||||||  ||||||||||||||||| |||||    
T  24235731 atagcttatgaaaacaacttatagcttatattcaaatagtttgactttatattatc 24235786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 516 - 599
Target Start/End: Original strand, 32555002 - 32555084
Alignment:
Q  516 tttagcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||| |||||| |||  || |||||| || |||||||||||| |||  ||||| ||||||| |||||||||||||||||    
T  32555002 tttagcttacttccataatct-tccaggataactcatgaaaacaacttatagcttataggaaaataatttgactttattttatc 32555084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 544 - 599
Target Start/End: Complemental strand, 37788882 - 37788827
Alignment:
Q  544 atagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||||||||||||| |||  ||||| ||||||| || ||||||||||||||    
T  37788882 atagcttatgaaaacaacttatagattatacgaaaataattggactttattttatc 37788827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 548 - 599
Target Start/End: Complemental strand, 54965524 - 54965473
Alignment:
Q  548 cttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||| ||||||||  || ||||||||||||| ||||||||||||||||||    
T  54965524 cttatggaaacaacttgtagtttatatgaaaattgtttgactttattttatc 54965473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 541 - 599
Target Start/End: Original strand, 21872316 - 21872374
Alignment:
Q  541 aggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||||||||||||||| |||  |||||| |||| | |||||| ||||||||||    
T  21872316 aggatagcttatgaaaacaacttatagcttatatcaaaaaaatttgaccttattttatc 21872374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 545 - 599
Target Start/End: Original strand, 31337450 - 31337504
Alignment:
Q  545 tagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||||| |||||| |||  |||||| |||| |||||||||||||||||||    
T  31337450 tagcttatgaatacaacttataacttatataaaaacagtttgactttattttatc 31337504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 537 - 599
Target Start/End: Original strand, 36646423 - 36646485
Alignment:
Q  537 ctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||||||||||||||||| | |||  ||||||||||| | ||  |||||||||||||    
T  36646423 ctctaggatagcttatgaaaacaagttataacttatatgaaaacaattatactttattttatc 36646485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 518 - 592
Target Start/End: Original strand, 51510215 - 51510289
Alignment:
Q  518 tagcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgacttta 592  Q
    |||||||||||||| | | ||| | |||| ||||||||||||||| ||| ||||||| |||||| ||| ||||||    
T  51510215 tagcttatttccataagctctccacgataacttatgaaaacaacttatagtttatatcaaaataattttacttta 51510289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 546 - 599
Target Start/End: Original strand, 3467438 - 3467491
Alignment:
Q  546 agcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||| |||||||||| ||| | |||||||||| | |||||||||||||||||    
T  3467438 agcttacgaaaacaacttatagtctatatgaaaacaatttgactttattttatc 3467491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 596
Target Start/End: Complemental strand, 21367690 - 21367637
Alignment:
Q  543 gatagcttatgaaaacaactaatactttatatgaaaatagtttgactttatttt 596  Q
    |||||||||||||||||||| |||| ||||| ||||| | ||| ||||||||||    
T  21367690 gatagcttatgaaaacaacttatacattatacgaaaacaatttaactttatttt 21367637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 595
Target Start/End: Complemental strand, 23249586 - 23249529
Alignment:
Q  538 tctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattt 595  Q
    |||| |||||||||||||||||||| |||  |||||| |||| |||||||||| ||||    
T  23249586 tctaagatagcttatgaaaacaacttatatcttatataaaaacagtttgacttcattt 23249529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 554 - 595
Target Start/End: Complemental strand, 28779368 - 28779327
Alignment:
Q  554 aaaacaactaatactttatatgaaaatagtttgactttattt 595  Q
    ||||||||| |||  |||||||||||||||||||||||||||    
T  28779368 aaaacaacttatagcttatatgaaaatagtttgactttattt 28779327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 597
Target Start/End: Original strand, 33965536 - 33965592
Alignment:
Q  543 gatagcttatgaaaacaactaatac--tttatatgaaaatagtttgactttatttta 597  Q
    ||||||||||||||||| || |||   |||||||||||| |||||||||||||||||    
T  33965536 gatagcttatgaaaacatcttatagcttttatatgaaaacagtttgactttatttta 33965592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 590
Target Start/End: Complemental strand, 48807737 - 48807684
Alignment:
Q  537 ctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactt 590  Q
    |||||| ||| ||||||||||||||| |||  || |||||||||||||||||||    
T  48807737 ctctagaataacttatgaaaacaacttatagcttctatgaaaatagtttgactt 48807684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 599
Target Start/End: Complemental strand, 2201151 - 2201095
Alignment:
Q  543 gatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||| ||||||||| || |||  ||||||||||| ||||||||||| |||||||    
T  2201151 gatagctaatgaaaacagcttatagcttatatgaaaacagtttgactttgttttatc 2201095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 540 - 595
Target Start/End: Complemental strand, 2321201 - 2321145
Alignment:
Q  540 taggatagcttatgaaaa-caactaatactttatatgaaaatagtttgactttattt 595  Q
    |||||||||||||||||| |||    || ||||||||||||||||||||||||||||    
T  2321201 taggatagcttatgaaaaacaagatctagtttatatgaaaatagtttgactttattt 2321145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 519 - 599
Target Start/End: Complemental strand, 23315673 - 23315593
Alignment:
Q  519 agcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||||||| | | || ||| |||||||||| ||||| || |||   |||||||||| | |||||||||||||||||    
T  23315673 agcttatttccataagctctttagaatagcttatggaaacatcttatagcctatatgaaaacaatttgactttattttatc 23315593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 599
Target Start/End: Complemental strand, 27792895 - 27792839
Alignment:
Q  543 gatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||| ||||||||||||||   |  |||||||||||||||||||| ||||||||||    
T  27792895 gatagtttatgaaaacaacttgcagcttatatgaaaatagtttgaccttattttatc 27792839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 542 - 590
Target Start/End: Complemental strand, 45590688 - 45590640
Alignment:
Q  542 ggatagcttatgaaaacaactaatactttatatgaaaatagtttgactt 590  Q
    ||||| ||||||||||||||| |||  |||||||||||||| |||||||    
T  45590688 ggataacttatgaaaacaacttatatcttatatgaaaatagattgactt 45590640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 505 - 599
Target Start/End: Complemental strand, 30257744 - 30257650
Alignment:
Q  505 cataagctttctttagcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||| | || |||||||||| || | ||||| ||||||| |||||||||||||| | |  ||||||| ||| |||||||||||||||||||    
T  30257744 cataagctgttttcagcttatttctataagccctccaggatagtttatgaaaacaacttaaagcttatatggaaacagtttgactttattttatc 30257650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 518 - 599
Target Start/End: Original strand, 48830098 - 48830179
Alignment:
Q  518 tagcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||||| || | | || ||| ||||||||||||||||  | |||  |||||||||||||||||||||||||||||||    
T  48830098 tagcttatttctattagctctttagaatagcttatgaaaacagtttatagcttatatgaaaatagtttgactttattttatc 48830179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 543 - 599
Target Start/End: Complemental strand, 45205091 - 45205035
Alignment:
Q  543 gatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||||||||||||||  ||  ||||||| |||||||||||||||||||||||    
T  45205091 gatagcttatgaaaacaacttctagcttatatggaaatagtttgactttattttatc 45205035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 544 - 599
Target Start/End: Original strand, 10581125 - 10581180
Alignment:
Q  544 atagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||||||||||||| |||  ||| ||||||| |||||||||||||||||||    
T  10581125 atagcttatgaaaacaacttatagcttaaatgaaaaaagtttgactttattttatc 10581180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 589
Target Start/End: Original strand, 4078196 - 4078242
Alignment:
Q  543 gatagcttatgaaaacaactaatactttatatgaaaatagtttgact 589  Q
    |||||||||||||||||||| |||  |||||||||||||||||||||    
T  4078196 gatagcttatgaaaacaacttatagattatatgaaaatagtttgact 4078242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 541 - 599
Target Start/End: Complemental strand, 4215397 - 4215339
Alignment:
Q  541 aggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||| |||| |||||| ||| ||| |||||||||||| |||||||||||||||||||    
T  4215397 aggataacttacgaaaacgactcatagtttatatgaaaacagtttgactttattttatc 4215339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 597
Target Start/End: Original strand, 25006081 - 25006135
Alignment:
Q  543 gatagcttatgaaaacaactaatactttatatgaaaatagtttgactttatttta 597  Q
    |||||||||||||||||||| |||  ||||||||||| | |||||||||||||||    
T  25006081 gatagcttatgaaaacaacttatagcttatatgaaaacaatttgactttatttta 25006135  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 545 - 599
Target Start/End: Original strand, 28467356 - 28467410
Alignment:
Q  545 tagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||||||||||||  ||  ||||||||||||| |||||||||||||||||    
T  28467356 tagcttatgaaaacaacttgtagcttatatgaaaataatttgactttattttatc 28467410  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 505 - 598
Target Start/End: Complemental strand, 9656711 - 9656618
Alignment:
Q  505 cataagctttctttagcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttat 598  Q
    |||||||| | || ||||||||| ||| || | || ||||||||||||||| ||| || |||  ||||||||||||| ||| ||||||||||||    
T  9656711 cataagctgttttgagcttattttcataattcatccaggatagcttatgaacacagcttatagcttatatgaaaataatttaactttattttat 9656618  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 541 - 597
Target Start/End: Original strand, 7218119 - 7218175
Alignment:
Q  541 aggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttatttta 597  Q
    ||||||| |||||||||||||| |||  ||||||||||| | |||||||||||||||    
T  7218119 aggataggttatgaaaacaacttatagcttatatgaaaacaatttgactttatttta 7218175  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 519 - 599
Target Start/End: Complemental strand, 25479628 - 25479548
Alignment:
Q  519 agcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||| ||| | | |||||||||||||||||||||||||| |||   |||||||| | | |||||| ||||||||||    
T  25479628 agcttattttcataagctctctaggatagcttatgaaaacaacttatagcctatatgaagacaatttgacgttattttatc 25479548  T

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Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 515 - 599
Target Start/End: Original strand, 27738199 - 27738283
Alignment:
Q  515 ctttagcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||||| ||||| | | |||  | ||||||||||||||||| | |||  ||||||||||| | |||||||||||||||||    
T  27738199 ctttagcttatatccataagctctcctgtatagcttatgaaaacaaattatagcttatatgaaaacaatttgactttattttatc 27738283  T

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Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 543 - 598
Target Start/End: Complemental strand, 45107648 - 45107590
Alignment:
Q  543 gatagcttatgaaaacaactaatact---ttatatgaaaatagtttgactttattttat 598  Q
    |||||||||||||||| ||||||  |   ||||||||||||||||||||||||||||||    
T  45107648 gatagcttatgaaaacgactaattataacttatatgaaaatagtttgactttattttat 45107590  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 599
Target Start/End: Complemental strand, 3924670 - 3924591
Alignment:
Q  520 gcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||||| | | ||  |||||||||||| |||||||||||||  ||||| ||||| |||||| ||| ||||||||    
T  3924670 gcttatttccataaactcttcaggatagcttataaaaacaactaatagattatacgaaaacagtttgccttgattttatc 3924591  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 543 - 598
Target Start/End: Complemental strand, 5150960 - 5150905
Alignment:
Q  543 gatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttat 598  Q
    |||||||||||||||||| | | |  ||| ||||||||||||||||||||||||||    
T  5150960 gatagcttatgaaaacaaattacaacttaaatgaaaatagtttgactttattttat 5150905  T

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Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 544 - 599
Target Start/End: Original strand, 15565880 - 15565935
Alignment:
Q  544 atagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||| ||||||| || ||| ||||||  ||||||||||||||||||||||||    
T  15565880 atagcttaagaaaacagcttatagtttatacaaaaatagtttgactttattttatc 15565935  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 541 - 596
Target Start/End: Complemental strand, 17269275 - 17269220
Alignment:
Q  541 aggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttatttt 596  Q
    |||||||||||||||||||||| ||   ||||||||||| | ||||||||||||||    
T  17269275 aggatagcttatgaaaacaacttattgcttatatgaaaacaatttgactttatttt 17269220  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 593
Target Start/End: Complemental strand, 8130459 - 8130409
Alignment:
Q  543 gatagcttatgaaaacaactaatactttatatgaaaatagtttgactttat 593  Q
    |||||||||||||||||||| |||  |||| |||||| |||||||||||||    
T  8130459 gatagcttatgaaaacaacttatagcttatgtgaaaacagtttgactttat 8130409  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 537 - 599
Target Start/End: Complemental strand, 15488983 - 15488921
Alignment:
Q  537 ctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||| |||||||| |||||  |||  |||||| |||||||||||||||||| |||||    
T  15488983 ctctaggataacttatgaagacaacgtatatcttatataaaaatagtttgactttatgttatc 15488921  T

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Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 541 - 599
Target Start/End: Original strand, 33527192 - 33527250
Alignment:
Q  541 aggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||| |||||||||||| || |||  ||||||||||| ||||||||| |||||||||    
T  33527192 aggataacttatgaaaacagcttatagattatatgaaaacagtttgactgtattttatc 33527250  T

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Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 537 - 587
Target Start/End: Complemental strand, 41638549 - 41638499
Alignment:
Q  537 ctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttga 587  Q
    |||||| |||||||||||||||| ||||||  |||||||||| ||||||||    
T  41638549 ctctagtatagcttatgaaaacagctaatagcttatatgaaagtagtttga 41638499  T

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Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 568 - 598
Target Start/End: Complemental strand, 45804275 - 45804245
Alignment:
Q  568 tttatatgaaaatagtttgactttattttat 598  Q
    |||||||||||||||||||||||||||||||    
T  45804275 tttatatgaaaatagtttgactttattttat 45804245  T

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Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 537 - 599
Target Start/End: Complemental strand, 49888796 - 49888734
Alignment:
Q  537 ctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||| ||||||||||||||||||||||||  ||||| ||||| | ||  |||||||||||||    
T  49888796 ctctaagatagcttatgaaaacaactaatagcttatacgaaaacaattaaactttattttatc 49888734  T

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Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 541 - 594
Target Start/End: Original strand, 7262563 - 7262616
Alignment:
Q  541 aggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttatt 594  Q
    ||||||||||||||||| |||| |||||| | ||||||| ||||| ||||||||    
T  7262563 aggatagcttatgaaaagaacttatacttaaaatgaaaacagtttaactttatt 7262616  T

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Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 596
Target Start/End: Original strand, 27887165 - 27887218
Alignment:
Q  543 gatagcttatgaaaacaactaatactttatatgaaaatagtttgactttatttt 596  Q
    ||||| |||||||||||||| |||  ||||||| |||| |||||||||||||||    
T  27887165 gatagtttatgaaaacaacttatagcttatatggaaattgtttgactttatttt 27887218  T

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Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 592
Target Start/End: Original strand, 29007771 - 29007812
Alignment:
Q  551 atgaaaacaactaatactttatatgaaaatagtttgacttta 592  Q
    |||||||||||| |||  ||||||||||||||||||||||||    
T  29007771 atgaaaacaacttatagcttatatgaaaatagtttgacttta 29007812  T

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Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 545 - 593
Target Start/End: Original strand, 5756735 - 5756783
Alignment:
Q  545 tagcttatgaaaacaactaatactttatatgaaaatagtttgactttat 593  Q
    ||||||| |||||||||| ||| |||||||||||| ||||| |||||||    
T  5756735 tagcttacgaaaacaacttataatttatatgaaaacagtttaactttat 5756783  T

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Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 519 - 599
Target Start/End: Original strand, 10199431 - 10199511
Alignment:
Q  519 agcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||||||| ||| | | |||||  |||||||||||||| | || ||   ||||| |||||||||||||||||||||||||    
T  10199431 agcttattttcataagctctctaaaatagcttatgaaaaaagcttatcgattatacgaaaatagtttgactttattttatc 10199511  T

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Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 519 - 599
Target Start/End: Complemental strand, 15361760 - 15361680
Alignment:
Q  519 agcttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||| |||||| | | ||| || ||| |||||||||||| || |||  ||||||||||||| |||||||||| ||||||    
T  15361760 agcttaattccataaactctcaagaatatcttatgaaaacagcttatagcttatatgaaaataatttgactttactttatc 15361680  T

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Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 599
Target Start/End: Original strand, 17422985 - 17423041
Alignment:
Q  543 gatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||| ||||||||||||| |||  ||||||||||  || ||||||||||||||||    
T  17422985 gatagcatatgaaaacaacttatagcttatatgaaatcagcttgactttattttatc 17423041  T

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Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 595
Target Start/End: Original strand, 42556678 - 42556730
Alignment:
Q  543 gatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattt 595  Q
    |||||||||||||||||||| |||  |||||| ||| |||||||| |||||||    
T  42556678 gatagcttatgaaaacaacttatagcttatataaaagtagtttgattttattt 42556730  T

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Target: scaffold0024 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 543 - 599
Target Start/End: Complemental strand, 27599 - 27543
Alignment:
Q  543 gatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||| |||||||||||||| ||| |||||||||||| | |||||||||||||||||    
T  27599 gatagtttatgaaaacaacttatagtttatatgaaaacaatttgactttattttatc 27543  T

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Target: scaffold0116 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 540 - 597
Target Start/End: Original strand, 18013 - 18070
Alignment:
Q  540 taggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttatttta 597  Q
    |||||||| || ||||||||||| ||| ||||||||||||| ||||||||| ||||||    
T  18013 taggatagtttttgaaaacaacttataatttatatgaaaatggtttgacttcatttta 18070  T

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Target: scaffold0110 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 538 - 599
Target Start/End: Original strand, 4265 - 4326
Alignment:
Q  538 tctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    ||||| ||||||||| |||||| || ||| ||||||||||||  ||||||||||||||||||    
T  4265 tctagcatagcttattaaaacagcttatagtttatatgaaaacggtttgactttattttatc 4326  T

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Target: scaffold0053 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 548 - 599
Target Start/End: Complemental strand, 20197 - 20146
Alignment:
Q  548 cttatgaaaacaactaatactttatatgaaaatagtttgactttattttatc 599  Q
    |||||||||||||||||||  |||||||| ||  ||||||||||||||||||    
T  20197 cttatgaaaacaactaatagcttatatgataactgtttgactttattttatc 20146  T

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Target: scaffold0153 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 569 - 598
Target Start/End: Original strand, 6571 - 6600
Alignment:
Q  569 ttatatgaaaatagtttgactttattttat 598  Q
    ||||||||||||||||||||||||||||||    
T  6571 ttatatgaaaatagtttgactttattttat 6600  T

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Target: scaffold0153; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 569 - 598
Target Start/End: Original strand, 13591 - 13620
Alignment:
Q  569 ttatatgaaaatagtttgactttattttat 598  Q
    ||||||||||||||||||||||||||||||    
T  13591 ttatatgaaaatagtttgactttattttat 13620  T

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