View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14081_low_10 (Length: 345)
Name: NF14081_low_10
Description: NF14081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14081_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 84 - 333
Target Start/End: Complemental strand, 42562513 - 42562267
Alignment:
| Q |
84 |
gtgcaaacaaaacttgtgtcaagtgcatctccctaatttatatatttcaagtagaaatttcataatatctatctatcagatcattcatgatttacggcca |
183 |
Q |
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| T |
42562513 |
gtgcaaacaaaacttgggtcaagtgcatctccctaatttatatatttcaagtagaaatttcataatatctatctatcagatcattcatgatctacggcca |
42562414 |
T |
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| Q |
184 |
taaaattcttgtaaattgcaacgtgatttagaaaaaacaaaattaaacaagatcatttttcattatagtgatgt--tagtgaataaattaatgataaagt |
281 |
Q |
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| T |
42562413 |
tgaaattcttgtaaattgcaacgtgatttagaaaaaacaaaattaaacaagatcattttt-----tagtgatgtaatagtgaataaattaatgataaaat |
42562319 |
T |
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| Q |
282 |
aagtaacacatgtttaaaatagatacaaagcagacatgtaaggattgatatt |
333 |
Q |
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| T |
42562318 |
aagtaacacatgtttaaaatagatacaaagcagacatgtaaggattgatatt |
42562267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 42562597 - 42562540
Alignment:
| Q |
1 |
ctaacaagcaatgaaagaaaaatgaatcgaaaataacctaatcattattcttaccttg |
58 |
Q |
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| T |
42562597 |
ctaacaagcaatgaaagaaaaatgaatcgaaaataacctaatcattattcttaccttg |
42562540 |
T |
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