View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14081_low_15 (Length: 296)
Name: NF14081_low_15
Description: NF14081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14081_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 32150007 - 32150257
Alignment:
| Q |
18 |
ctctcaccgtgagagacctatcaaggtcgctcaccctagaaggcgcctacatacagtttatacttaaaacgataggataaaataagaattctttgaacat |
117 |
Q |
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| T |
32150007 |
ctctcaccgtgagagacttatcaaggtcgctcaccctaaaaggcgcctacatacagtttatacttaaaacgataggataaaataagaattctttgaacaa |
32150106 |
T |
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| Q |
118 |
caaataaatgttaaaaattcactataagtgaaggaaattatgtagggtctctctaatatgcagacttttataaaaggggtatcatattcactatcacaaa |
217 |
Q |
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| T |
32150107 |
caaataaatgttaaaaattcactataagtgaaggaaattatgtagggtctctctaataggcacacttttataaaaggggtatcatattcactatcacaaa |
32150206 |
T |
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| Q |
218 |
ctaaaattcactataagttcacagttacaagagtagaagccctcacatggc |
268 |
Q |
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| T |
32150207 |
ctaaaattcactataagttcacagttacaagagtagaagccctcacatggc |
32150257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 7005217 - 7005268
Alignment:
| Q |
10 |
ataatactctctcaccgtgagagacctatcaaggtcgctcaccctagaaggc |
61 |
Q |
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| T |
7005217 |
ataatactctctcaccgtgagagacctatcaaagtcgctcaccctagaaggc |
7005268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 1174719 - 1174773
Alignment:
| Q |
10 |
ataatactctctcaccgtgagagacctatcaaggtcgctcaccctagaaggcgcc |
64 |
Q |
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| T |
1174719 |
ataatattctctcatcgtgagagacctatcaaggtcgctcacctcagaaggcgcc |
1174773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 32124761 - 32124837
Alignment:
| Q |
120 |
aataaatgttaaaaattcactataagtgaaggaaattatgtagggtctctc--taatatgcagacttttataaaagg |
194 |
Q |
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| T |
32124761 |
aataaatgctaaaaattcaatataagtgagggaaattatcgagggtctctctataatatgcacacttttaaaaaagg |
32124837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 41727942 - 41727983
Alignment:
| Q |
10 |
ataatactctctcaccgtgagagacctatcaaggtcgctcac |
51 |
Q |
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| T |
41727942 |
ataatactctctcaccgtgagagacctatcaaggtcactcac |
41727983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 22376605 - 22376647
Alignment:
| Q |
23 |
accgtgagagacctatcaaggtcgctcaccctagaaggcgcct |
65 |
Q |
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| T |
22376605 |
accgtgggagacctattaaggtctctcaccctagaaggcgcct |
22376647 |
T |
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