View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14081_low_4 (Length: 580)
Name: NF14081_low_4
Description: NF14081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14081_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 12 - 561
Target Start/End: Complemental strand, 8139490 - 8138941
Alignment:
| Q |
12 |
aattcttaaagctagttggattgtttgaaacaaagttacaagcaccaggactattgtaaaattgaacccaaacatagtcaaaaagtccagtattaattgc |
111 |
Q |
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| T |
8139490 |
aattcttaaagctagttggattgtttgaaacaaagttacaagcaccaggactattgtaaaattgaacccaaacatagtcaaaaagtccagtattaattgc |
8139391 |
T |
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| Q |
112 |
cttttgaagtatattatcttgaaagatacacaatggagcagcagttaagtaaaacttttttctagaagatttataatgatcgtttagctttaaagcaagt |
211 |
Q |
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| T |
8139390 |
cgtttgaagtatattatcttgaaagatacacaatggagcagcagttaagtaaaacttttttctagaagatttataatgatcgtttagctttaaagcaagt |
8139291 |
T |
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| Q |
212 |
gtttcataatggagtttactacctccttcaatatcaaaatccactccatctagtatagcatcaccaaaaggtctagagggtgaattacctcccaaaaagt |
311 |
Q |
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| T |
8139290 |
gtttcataatggagtttactacctccttcaatatcaaaatccactccatctagtatagcatcaccaaaaggtctagagggtgaattacctcccaaaaagt |
8139191 |
T |
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| Q |
312 |
tgttccaaatgtagtcagcaagttgattagcatcctctggtgatgaaaaagagtatgtgttcctatcttcaccaccaatggaaagcataaccttaatgcc |
411 |
Q |
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| T |
8139190 |
tgttccaaatgtagtcagcaagttgattagcatcctctggtgatgaaaaagagtatgtgttcctatcttcaccaccaatggaaagcataaccttaatgcc |
8139091 |
T |
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| Q |
412 |
tctactctgacaaatatttatgctatctctcaaatttttgcaattgggtgggttacaatgaccagctaggtttaactgtggttgacgaccacttccgaaa |
511 |
Q |
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| T |
8139090 |
tctactctgacaaatatttatgctatctctcaaatttttgcaattgggtgggttacaatgaccagctaggtttaactgtggttgacgaccacttccgaaa |
8138991 |
T |
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| Q |
512 |
gttgagaggaatgctatgtttactatattgaagagacccgtgttgcatgt |
561 |
Q |
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| T |
8138990 |
gttgagaggaatgctatgtttactatattgaagagaccagtgttgcatgt |
8138941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 65 - 99
Target Start/End: Original strand, 48222347 - 48222381
Alignment:
| Q |
65 |
ttgtaaaattgaacccaaacatagtcaaaaagtcc |
99 |
Q |
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| T |
48222347 |
ttgtaaaattgaacccaaacatagtcaaatagtcc |
48222381 |
T |
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