View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14081_low_5 (Length: 550)

Name: NF14081_low_5
Description: NF14081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14081_low_5
NF14081_low_5
[»] chr1 (5 HSPs)
chr1 (337-474)||(52140746-52140883)
chr1 (471-518)||(52140667-52140714)
chr1 (174-235)||(6923510-6923571)
chr1 (288-331)||(52140901-52140944)
chr1 (404-436)||(52131249-52131281)
[»] chr4 (2 HSPs)
chr4 (10-218)||(37615638-37615847)
chr4 (197-233)||(17558824-17558860)
[»] chr8 (4 HSPs)
chr8 (360-462)||(17524854-17524955)
chr8 (232-356)||(17524437-17524571)
chr8 (471-518)||(17525002-17525049)
chr8 (197-234)||(16367881-16367918)
[»] chr6 (1 HSPs)
chr6 (10-157)||(22083598-22083733)
[»] chr3 (2 HSPs)
chr3 (196-237)||(52130754-52130795)
chr3 (197-233)||(5561552-5561588)
[»] chr7 (1 HSPs)
chr7 (196-232)||(24763319-24763355)


Alignment Details
Target: chr1 (Bit Score: 134; Significance: 2e-69; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 337 - 474
Target Start/End: Complemental strand, 52140883 - 52140746
Alignment:
Q  337 gtggcaactgtttgtacataaatacatcgaattaaattagcaataccgtggccactggtacttcatacattccaatttccaatctctaagtaataaatac 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52140883 gtggcaactgtttgtacataaatacatcgaattaaattagcaataccgtggccactggtacttcatacattccaatttccaatctctaagtaataaatac 52140784  T
Q  437 caaacttacttttacaattttctatacatcttccacta 474  Q
    ||| ||||||||||||||||||||||||||||||||||    
T  52140783 caagcttacttttacaattttctatacatcttccacta 52140746  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 471 - 518
Target Start/End: Complemental strand, 52140714 - 52140667
Alignment:
Q  471 actagcctctctgttaatgcattatctttcaatatggcttcttcttca 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52140714 actagcctctctgttaatgcattatctttcaatatggcttcttcttca 52140667  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 6923510 - 6923571
Alignment:
Q  174 ttcaactaatatttttagcaaattatgacccatgcggcagcacgggtagacaatctagttta 235  Q
    ||||||||||||||||||| |  |||||||| ||| || |||||||||||| ||||||||||    
T  6923510 ttcaactaatatttttagctatatatgacccgtgctgctgcacgggtagacgatctagttta 6923571  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 331
Target Start/End: Complemental strand, 52140944 - 52140901
Alignment:
Q  288 gttggccaattgcagaggaggataagagaactcaaaatcaagct 331  Q
    ||||||||||||||||||||  |||||||||||||||| |||||    
T  52140944 gttggccaattgcagaggagattaagagaactcaaaattaagct 52140901  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 404 - 436
Target Start/End: Complemental strand, 52131281 - 52131249
Alignment:
Q  404 cattccaatttccaatctctaagtaataaatac 436  Q
    |||||||||||||||||||| ||||||||||||    
T  52131281 cattccaatttccaatctcttagtaataaatac 52131249  T

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Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 10 - 218
Target Start/End: Complemental strand, 37615847 - 37615638
Alignment:
Q  10 gtggagtagcataggccggacaattatggttatgtatgtctatcatatct--ataattttttaacctatgtaagatgatcatacgtcaattaattaatcg 107  Q
    |||||||| ||||||||| |||||||||| ||||||||||| ||||||||    | ||||||||||||||||||| |||| ||||||    |||||||||    
T  37615847 gtggagtaacataggccgaacaattatggctatgtatgtctctcatatcttcgaatttttttaacctatgtaagacgatcgtacgtc----aattaatcg 37615752  T
Q  108 catttagtcagaacaatttggtacattgagtaactatatattaattttatcggatatat---gattgctttcaactaatatttttagcaaattatgaccc 204  Q
    ||||  ||||||||||||  ||| |||||||||||||||||||||||||| ||||||||    || |||||||||||||| |||||| ||||||||||||    
T  37615751 cattacgtcagaacaattcagtatattgagtaactatatattaattttattggatatataacaatggctttcaactaatagttttagtaaattatgaccc 37615652  T
Q  205 atgcggcagcacgg 218  Q
     ||| |||||||||    
T  37615651 gtgcagcagcacgg 37615638  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 17558860 - 17558824
Alignment:
Q  197 tatgacccatgcggcagcacgggtagacaatctagtt 233  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  17558860 tatgacccgtgcggcagcacgggtagacgatctagtt 17558824  T

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Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 360 - 462
Target Start/End: Original strand, 17524854 - 17524955
Alignment:
Q  360 acatcgaattaaattagcaataccgtggccactggtacttcatacattccaatttccaatctctaagtaataaataccaaacttacttttacaattttct 459  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  17524854 acatcgaattaaattagcaataccgtggccagtaggacttcatacattccaatttccaatctctaagtaataaatacc-aagttacttttacaattttct 17524952  T
Q  460 ata 462  Q
    |||    
T  17524953 ata 17524955  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 232 - 356
Target Start/End: Original strand, 17524437 - 17524571
Alignment:
Q  232 tttaacaaatttgtgtgaaccatcgcggtattctaccaagtttctcttgctcaaatg-ttggccaattgcagaggaggataagagaactcaaaatcaag- 329  Q
    ||||| ||||||||||||| |||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||  |||||||||||||||| |||     
T  17524437 tttaagaaatttgtgtgaaacatcgcggtactctaccaagtttctcttgctccaatgtttggccaattgcagaggagattaagagaactcaaaattaagc 17524536  T
Q  330 --------ctcgtaagtggcaactgtttgtacata 356  Q
            |||||||||||||||||||||||||||    
T  17524537 tttaattactcgtaagtggcaactgtttgtacata 17524571  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 471 - 518
Target Start/End: Original strand, 17525002 - 17525049
Alignment:
Q  471 actagcctctctgttaatgcattatctttcaatatggcttcttcttca 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17525002 actagcctctctgttaatgcattatctttcaatatggcttcttcttca 17525049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 16367881 - 16367918
Alignment:
Q  197 tatgacccatgcggcagcacgggtagacaatctagttt 234  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  16367881 tatgacccgtgcggcagcacgggtagacgatctagttt 16367918  T

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Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 10 - 157
Target Start/End: Original strand, 22083598 - 22083733
Alignment:
Q  10 gtggagtagcataggccggacaattatggttatgtatgtctatcatatctataattttttaacctatgtaagatgatcatacgtcaattaattaatcgca 109  Q
    |||||||| ||||||||| ||| |||||| ||||||||||| ||||||||        |  |||||||||||| |||||||||| ||||    |||||||    
T  22083598 gtggagtaacataggccgaacagttatggctatgtatgtctctcatatct--------tcgacctatgtaagacgatcatacgtgaatt----aatcgca 22083685  T
Q  110 tttagtcagaacaatttggtacattgagtaactatatattaattttat 157  Q
    ||  ||||||||||||  ||||||||||||||||||| ||||||||||    
T  22083686 ttacgtcagaacaattcagtacattgagtaactatatcttaattttat 22083733  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 52130754 - 52130795
Alignment:
Q  196 ttatgacccatgcggcagcacgggtagacaatctagtttaac 237  Q
    ||||||||| ||||||||||||||||||||||||||| ||||    
T  52130754 ttatgacccgtgcggcagcacgggtagacaatctagtctaac 52130795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 5561588 - 5561552
Alignment:
Q  197 tatgacccatgcggcagcacgggtagacaatctagtt 233  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  5561588 tatgacccgtgcggcagcacgggtagacgatctagtt 5561552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 24763319 - 24763355
Alignment:
Q  196 ttatgacccatgcggcagcacgggtagacaatctagt 232  Q
    ||||||||| |||||||||||||||||||||||||||    
T  24763319 ttatgacccgtgcggcagcacgggtagacaatctagt 24763355  T

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