View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14081_low_6 (Length: 549)
Name: NF14081_low_6
Description: NF14081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14081_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 458; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 18 - 546
Target Start/End: Complemental strand, 8280288 - 8279759
Alignment:
| Q |
18 |
ctatctttgtgtacttgctcatagttcttgctctccttgaccgtgtgagaacaagttgagcttccctatctccttcagaaaaataacccatcc-ccaatt |
116 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
8280288 |
ctatctttgtgtacttgctcatagtccttgttcttcttgaccgtgtgagaacaagttgagcttctctatctccttcagaaaaataacccatcctccaatt |
8280189 |
T |
|
| Q |
117 |
ctgaagaatcaaatccttgaaacaagacacatgatagcaagaatttccatcataataagaccatccttgaacttttcccataacatgcttatgcttacat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8280188 |
ctgaagaatcaaatccttgaaacaagacacatgatagcaagaatttccatcataataagaccatccttgaacttttcccataacatgcttatgcttacat |
8280089 |
T |
|
| Q |
217 |
ttagcacactttgaatgaaccctcttagacaaattcaatgtcacgtttccattatcatccgaaatactatgttgcagcttcaaacaacatggatgaagat |
316 |
Q |
| |
|
||| |||||||||||||||| ||||| ||||||||||| ||||||||||| |||||||| || ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8280088 |
ttaccacactttgaatgaactctctttgacaaattcaacgtcacgtttccgttatcatcagatatactatgttgcaacttcaaacaacatggatgaagat |
8279989 |
T |
|
| Q |
317 |
catagtctgtgctagagcaatgataaacaaaccctaacacgtcttttccacaagcattacagtatcttgttttatatccaggtggttttctatggaactc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8279988 |
catagtctgtgctagagcaatgataaacaaaccctaacacatcttttccacaagcattacagtatcttgttttatatccaggtggttttcgatggaactc |
8279889 |
T |
|
| Q |
417 |
gaaatagcttttctcgaaaaatggatgaaaggcgtaaggatcgggatttgcacatacttcatgaaggacataactgcaattgatattttcgcaatggtag |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8279888 |
gaaatagcttttctcgaaaaatggatgaaaggcgtaaggatcgggatttgcacatacttcatgaaggacataactgcaattgatattttcgcaatggtag |
8279789 |
T |
|
| Q |
517 |
cttgatccaaaccctaattctccacaacca |
546 |
Q |
| |
|
|||||||| ||||||| ||||||||||||| |
|
|
| T |
8279788 |
cttgatccgaaccctagttctccacaacca |
8279759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 82 - 549
Target Start/End: Original strand, 8262165 - 8262627
Alignment:
| Q |
82 |
cctatctccttcagaaaaataacccatcc-ccaattctgaagaatcaaatccttgaaacaagacacatgatagcaagaatttccatcataataagaccat |
180 |
Q |
| |
|
||||||||||| ||||||||||||| || ||| |||| ||| |||||| |||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
8262165 |
cctatctccttgagaaaaataaccccccctccagttctcaagtatcaaagccttgaaacaagacacatgataactagaatttccatcataataagaccac |
8262264 |
T |
|
| Q |
181 |
ccttgaacttttcccataacatgcttatgcttacatttagcacactttgaatgaaccctcttagacaaattcaatgtcacgtttccattatcatccgaaa |
280 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||| ||||||||||| || | | | | | | ||||||||||||| | ||||| |||| |
|
|
| T |
8262265 |
ccttgaaaatttcccacaacatgcttatgcttacatttcacacactttgaacgagctttatgatagag------tgtcacgtttccactttcatctgaaa |
8262358 |
T |
|
| Q |
281 |
tactatgttgcagcttcaaacaacatggatgaagatcatagtctgtgctagagcaatgataaacaaaccctaacacgtcttttccacaagcattacagta |
380 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8262359 |
tactatgtttcagcttcaaacaacatggatgaagatcatagtctgtgctagagcaatgataaacaaaccctaacacatcttttccacaagcattacagta |
8262458 |
T |
|
| Q |
381 |
tcttgttttatatccaggtggttttctatggaactcgaaatagcttttctcgaaaaatggatgaaaggcgtaaggatcgggatttgcacatacttcatga |
480 |
Q |
| |
|
||||||||||| ||||| |||||| ||||||| ||||||||||||| | ||||||||||||| ||| | |||||| |||| ||||||| || |||| |
|
|
| T |
8262459 |
tcttgttttatttccagttggtttcttatggaattcgaaatagctttctttgaaaaatggatgacgggcatgaggatcaggatatgcacattctccatgc |
8262558 |
T |
|
| Q |
481 |
aggacataactgcaattgatattttcgcaatggtagcttgatccaaaccctaattctccacaaccactg |
549 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8262559 |
aggacataactgcaattgatattttcacaatggtaacttgatccaaaccctaattctccacaaccactg |
8262627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 111 - 537
Target Start/End: Complemental strand, 8322772 - 8322352
Alignment:
| Q |
111 |
ccaattctgaagaatcaaatccttgaaacaagacacatgatagcaagaatttccatcataataagaccatccttgaacttttcccataacatgcttatgc |
210 |
Q |
| |
|
|||||| | ||| |||||| |||||||||||||||||||||| | |||||||||||||||||||||||| ||||||| ||||||| ||||||||||||| |
|
|
| T |
8322772 |
ccaattatcaagtatcaaagccttgaaacaagacacatgataactagaatttccatcataataagaccacccttgaatatttcccacaacatgcttatgc |
8322673 |
T |
|
| Q |
211 |
ttacatttagcacactttgaatgaaccctcttagacaaattcaatgtcacgtttccattatcatccgaaatactatgttgcagcttcaaacaacatggat |
310 |
Q |
| |
|
|||||||| ||||||||||| || | | | | | || | |||||| ||||| | |||||||||| |||||||||||||||||| |||| |
|
|
| T |
8322672 |
ttacattttacacactttgaacgagatttacgatagagttgcagtttcacgtctccatca------gaaatactatcttgcagcttcaaacaacaaggat |
8322579 |
T |
|
| Q |
311 |
gaagatcatagtctgtgctagagcaatgataaacaaaccctaacacgtcttttccacaagcattacagtatcttgttttatatccaggtggttttctatg |
410 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
8322578 |
gaagatcatatcctgttttagagcaatgataaacaaaccctaacacatctcctccacaagcattacagtatcttcttttatatccaggtggttttctaag |
8322479 |
T |
|
| Q |
411 |
gaactcgaaatagcttttctcgaaaaatggatgaaaggcgtaaggatcgggatttgcacatacttcatgaaggacataactgcaattgatattttcgcaa |
510 |
Q |
| |
|
||| || ||| |||||||| ||||||||||||| ||| | |||||| |||| ||||||| || |||| ||||||||||||||||| ||||||| ||| |
|
|
| T |
8322478 |
gaaatcaaaacagcttttcctgaaaaatggatgacgggcatgaggatcaggatatgcacattctccatgcaggacataactgcaattcttattttcacaa |
8322379 |
T |
|
| Q |
511 |
tggtagcttgatccaaaccctaattct |
537 |
Q |
| |
|
||||| ||||||||||| ||||||||| |
|
|
| T |
8322378 |
tggtaacttgatccaaaacctaattct |
8322352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 353
Target Start/End: Original strand, 8402625 - 8402684
Alignment:
| Q |
294 |
cttcaaacaacatggatgaagatcatagtctgtgctagagcaatgataaacaaaccctaa |
353 |
Q |
| |
|
||||||||||||||||||||||||||| | || |||||| ||||| || ||||| ||||| |
|
|
| T |
8402625 |
cttcaaacaacatggatgaagatcatattatgagctagaacaatggtagacaaaacctaa |
8402684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 373
Target Start/End: Original strand, 8255477 - 8255593
Alignment:
| Q |
257 |
tcacgtttccattatcatccgaaatactatgttgcagcttcaaacaacatggatgaagatcatagtctgtgctagagcaatgataaacaaaccctaacac |
356 |
Q |
| |
|
|||||||||||| | ||| ||||| ||| |||||||||||||||||| ||||| ||| |||| |||| | || ||||| || | ||| |||||||| |
|
|
| T |
8255477 |
tcacgtttccatctttatcagaaattttatcttgcagcttcaaacaacaaggatgtagagcatatcctgttcgggaacaatggtagaaaaaacctaacac |
8255576 |
T |
|
| Q |
357 |
gtcttttccacaagcat |
373 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
8255577 |
atctttcccacaagcat |
8255593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University