View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14081_low_7 (Length: 536)
Name: NF14081_low_7
Description: NF14081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14081_low_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 14 - 536
Target Start/End: Complemental strand, 7064554 - 7064047
Alignment:
| Q |
14 |
atatgtagcaagatattcttaaaacaaataactaaatgtgtcatcattccttaatcattttatccttgacataaattgtatgtacttgagtccttcaann |
113 |
Q |
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| T |
7064554 |
atatgtaccaagatattcttaaaacaaataactaaatgtgtcatcattccttaatcattttat----------------atgtacttgagtccttcaatt |
7064471 |
T |
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| Q |
114 |
nnnnnnggtcaaagtttactttctgaccgatgcacatgaagnnnnnnnnncataaatcaaaatatgtttaacatctcaaataaattttagttactttaaa |
213 |
Q |
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| T |
7064470 |
ttttttggtcaaagtttactttctgaccgatgcacatgaagaaaaaaaaacataaatcaaaatatgtttaacatctcaaataaattttagttactttaaa |
7064371 |
T |
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| Q |
214 |
ttagtttttacaattgtgtgaagatatatctttagttaactaccgatcatcattaataattttataatgaatatactt-atacaggtggacaggagatac |
312 |
Q |
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| T |
7064370 |
ttagtttttacaattgtgtgaagatatatctttagttaactaccgatcatcattaataattttataatgaatatacttgatacaggtggacaggagatac |
7064271 |
T |
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| Q |
313 |
aatcactattgtgaacaaatgcaaatggtagtgaactcatttgatgtgatgatgggttttggagcagcagttccatacacagcactagcacaaaaagcaa |
412 |
Q |
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| T |
7064270 |
aatcactattgtgaacaaatgcaaatggtagtgaactcatttgatgtgatgatgggttttggagcagcagttccatacacagcactagcacaaaaagcaa |
7064171 |
T |
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| Q |
413 |
tgtctcgacattttcggtgtctaaaggatgcaataacagcacaagtgaagcaaagttgtgagttactaggtgagaaagaaggtgcaggaggaggtttaac |
512 |
Q |
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| T |
7064170 |
tgtctcgacattttcggtgtctaaaggatgcaataacaacacaagtgaagcaaagttgtgagttactaggtgagaaagaaggtgcaggaggaggtttaac |
7064071 |
T |
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| Q |
513 |
caaaggtgagacccctaggcttaa |
536 |
Q |
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| T |
7064070 |
caaaggtgagacccctaggcttaa |
7064047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 8e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 292 - 496
Target Start/End: Original strand, 33457795 - 33457999
Alignment:
| Q |
292 |
atacaggtggacaggagatacaatcactattgtgaacaaatgcaaatggtagtgaactcatttgatgtgatgatgggttttggagcagcagttccataca |
391 |
Q |
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| T |
33457795 |
atacaggtggatagaagatacagtcattactgtgaacaaatgcaaatggtggtgaactcatttgacctagtaatgggatttggagcagcagttccataca |
33457894 |
T |
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| Q |
392 |
cagcactagcacaaaaagcaatgtctcgacattttcggtgtctaaaggatgcaataacagcacaagtgaagcaaagttgtgagttactaggtgagaaaga |
491 |
Q |
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| T |
33457895 |
cggcactagctcagaaagcaatgtcacgccattttcgttgtttaaaggatgcaataacagcacagttgaaacatagttgtgagttattaggagagaaaga |
33457994 |
T |
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| Q |
492 |
aggtg |
496 |
Q |
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|||| |
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| T |
33457995 |
tggtg |
33457999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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