View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14082_high_1 (Length: 567)
Name: NF14082_high_1
Description: NF14082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14082_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 31 - 559
Target Start/End: Original strand, 1949626 - 1950154
Alignment:
| Q |
31 |
gaaagctccgcaaacgctgcacaggtatcatgatcataataactaacaggccccttccgagcattcttcttcgcaccattcatagggcaatgaaacaaag |
130 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1949626 |
gaaagctccgcaaacgctgcacaggtatcatgatcataataactaacaggccccttccgagcattcttcttcgcaccattcatagggcaatgaaacaaag |
1949725 |
T |
|
| Q |
131 |
cagacatagggttccattctgaagaagacccattgatatccttaaaattcccactaaaccctaaaggaaaatgcccaaagctacagaaataaccaccagc |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1949726 |
cagacatagggttccattctgaagaagacccattgatatccttaaaattcccactaaaccctaaaggaaaatgcccaaagctacagaaataaccaccagc |
1949825 |
T |
|
| Q |
231 |
ctctccctcaccaccgtcttcttcggtcacctccggtggtgcccgtacaaccactgcatgaaaacccctcttacaattctgacaccggagtgtacaatca |
330 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1949826 |
ctctccctcaccaccgtcttcttcagtcacctccggtggtgcccgtacaaccactgcatgaaaacccctcttacaattctgacaccggagtgtacaatca |
1949925 |
T |
|
| Q |
331 |
acataaaccttaggatactcaaacatgccataacagtaaggacaagccgtccagaaagtttgaccgtcagtttcactcggcttagctccagcagactccg |
430 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1949926 |
acataaaccttaggatactcaaacatgccataacagtaaggacaagccgtccagaaagtttgaccgtcagtttcactcggcttagctccagcagactccg |
1950025 |
T |
|
| Q |
431 |
gcctgggcctaggcccagtggactgatcagcattgccatgactcggcccgttgttttgttcctcaaacaccccaacaggttcattggttgacctagggtt |
530 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1950026 |
gcctgggcctaggcccagtggactgatcagcattgccatgactcggcccgttgttttgttcctcaaacaccccaacagattcattggttgacctagggtt |
1950125 |
T |
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| Q |
531 |
ttggttttttctctgttgttgatgatgat |
559 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
1950126 |
ttggttttttctctgttgttgatgatgat |
1950154 |
T |
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