View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14082_high_10 (Length: 338)
Name: NF14082_high_10
Description: NF14082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14082_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 2466963 - 2466656
Alignment:
| Q |
18 |
cactgtgagcttcttcaagatgtcatcataattattatgatataaatgtataattaaattagaactttattctcaatttggttgtttctgcaaagaaaac |
117 |
Q |
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| T |
2466963 |
cactgtgagcttcttcaagatgtcatcataattattatgatataaatgtataattaaattagaactttattctcaatttggttgtttctgcaaagaaaac |
2466864 |
T |
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| Q |
118 |
ttatgtatcgagttagacataattatttaaccaactttcagttctttcttttacttgctgcaatattttgttttgtatatgccccattctttttatgaat |
217 |
Q |
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| T |
2466863 |
ttatgtatcgagttagacataattatttaaccaactttcagttctttcttttacttgctgcaatattttgttttgtatatgccccattctttttatgaat |
2466764 |
T |
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| Q |
218 |
attagatttgtaagctttaaatgaataggccttctgtggacattctttttgtccagctgcaaaaattaattccaacattttttctaacgacgtcaacttc |
317 |
Q |
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| T |
2466763 |
attagatttgtaagctttaaatgaataggccttctgtggacattctttttgtccagcagcaaaaattaattccaacattttttctaacgacgtcaacttc |
2466664 |
T |
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| Q |
318 |
cacaggtt |
325 |
Q |
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|||||||| |
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| T |
2466663 |
cacaggtt |
2466656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 195
Target Start/End: Original strand, 5103016 - 5103136
Alignment:
| Q |
74 |
aattagaactttattctcaatttggttgtttctgcaaagaaaacttatgtatcgagttagacataattatttaaccaactttcagttctttcttttactt |
173 |
Q |
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|||||||| |||||||||||||| | |||| | |||| | |||||||| ||| ||||||||||||| |||||| |||| |||||||| ||| |||||||| |
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| T |
5103016 |
aattagaattttattctcaatttagctgttaccgcaaggcaaacttatatattgagttagacataactatttatccaaatttcagtt-tttattttactt |
5103114 |
T |
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| Q |
174 |
gctgcaatattttgttttgtat |
195 |
Q |
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| T |
5103115 |
gctgcaatgttttgttttgtat |
5103136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 195
Target Start/End: Original strand, 5107092 - 5107169
Alignment:
| Q |
118 |
ttatgtatcgagttagacataattatttaaccaactttcagttctttcttttacttgctgcaatattttgttttgtat |
195 |
Q |
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| T |
5107092 |
ttatatattgagttagacatatttatttatccagctttcagttctttcttttactttctgcaatgttttgttttgtat |
5107169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 194
Target Start/End: Complemental strand, 2485655 - 2485583
Alignment:
| Q |
121 |
tgtatcgagttagacataattatttaaccaactttcagttctttcttttacttgctgcaatattttgttttgta |
194 |
Q |
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| T |
2485655 |
tgtattgagttagacataatgatttatccaactcccagtt-ttccttttactagctgcaatgttttcttttgta |
2485583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 2462854 - 2462783
Alignment:
| Q |
122 |
gtatcgagttagacataattatttaaccaactttcagttctttcttttacttgctgcaatattttgttttgta |
194 |
Q |
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|||| |||||||||||||| ||||| |||||| ||||| || |||||||| |||||||| |||| ||||||| |
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| T |
2462854 |
gtattgagttagacataatgatttatccaactcccagtt-ttccttttactagctgcaatgttttcttttgta |
2462783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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