View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14082_high_12 (Length: 283)

Name: NF14082_high_12
Description: NF14082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14082_high_12
NF14082_high_12
[»] chr8 (4 HSPs)
chr8 (90-258)||(24744465-24744632)
chr8 (86-258)||(43583388-43583559)
chr8 (204-258)||(24750022-24750076)
chr8 (204-258)||(43579751-43579805)
[»] chr6 (2 HSPs)
chr6 (86-258)||(26452107-26452278)
chr6 (204-258)||(26446576-26446630)
[»] chr5 (2 HSPs)
chr5 (86-258)||(21006211-21006382)
chr5 (204-258)||(21011799-21011853)
[»] chr1 (3 HSPs)
chr1 (124-192)||(32960126-32960194)
chr1 (208-258)||(48332786-48332836)
chr1 (204-258)||(24501976-24502030)


Alignment Details
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 90 - 258
Target Start/End: Complemental strand, 24744632 - 24744465
Alignment:
Q  90 aaaccctaatttttgacatttcatgcccttttatattgatgacagtgatttgccatgtcctcaagtgattggccaacctggagtaccacatgttcagagt 189  Q
    |||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||   |||| ||| || |||    
T  24744632 aaaccctaatttttgacatttcatccccttttatattgctgatagtgatttgccatgtcctcaagtgattggccaacgtggacagccacctgtacatagt 24744533  T
Q  190 taacgnnnnnnnnccaaaaagttaacagaaatgaccaattaagtaaacggaagagtacttacaggacca 258  Q
    |||||         ||||||||||||||||| |||||| |||||||||||| |||||||||||||||||    
T  24744532 taacgtttttttt-caaaaagttaacagaaaggaccaactaagtaaacggaggagtacttacaggacca 24744465  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 86 - 258
Target Start/End: Original strand, 43583388 - 43583559
Alignment:
Q  86 aataaaaccctaatttttgacatttcatgcccttttatattgatgacagtgatttgccatgtcctcaagtgattggccaacctggagtaccacatgttca 185  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||   |||| | | ||    
T  43583388 aataaaaccctaatttttgacatttcatccccttttatattgctgatagtgatttgccatgtcctcaagtgattggccaacgtggacagccacttatgca 43583487  T
Q  186 gagttaacgnnnnnnnnccaaaaagttaacagaaatgaccaattaagtaaacggaagagtacttacaggacca 258  Q
    |||||||||         ||||||||||||||||| || ||| |  ||||||||||||| |||||||||||||    
T  43583488 gagttaacgtttttttt-caaaaagttaacagaaaggatcaactgggtaaacggaagagaacttacaggacca 43583559  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 204 - 258
Target Start/End: Original strand, 24750022 - 24750076
Alignment:
Q  204 caaaaagttaacagaaatgaccaattaagtaaacggaagagtacttacaggacca 258  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  24750022 caaaaagttaacagaaaggaccaactaagtaaacggaagagtacttacaggacca 24750076  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 204 - 258
Target Start/End: Complemental strand, 43579805 - 43579751
Alignment:
Q  204 caaaaagttaacagaaatgaccaattaagtaaacggaagagtacttacaggacca 258  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  43579805 caaaaagttaacagaaaggaccaactaagtaaacggaagagtacttacaggacca 43579751  T

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Target: chr6 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 86 - 258
Target Start/End: Original strand, 26452107 - 26452278
Alignment:
Q  86 aataaaaccctaatttttgacatttcatgcccttttatattgatgacagtgatttgccatgtcctcaagtgattggccaacctggagtaccacatgttca 185  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||   |||| ||  ||    
T  26452107 aataaaaccctaatttttgacatttcatccccttttatattgctgatagtgatttgccatgtcctcaagtgattggccaacgtggacagccacctgaaca 26452206  T
Q  186 gagttaacgnnnnnnnnccaaaaagttaacagaaatgaccaattaagtaaacggaagagtacttacaggacca 258  Q
     ||||||||          || || |||||||||| |||||| ||||||||||||||||||||||||||||||    
T  26452207 tagttaacgtttttttt-taacaaattaacagaaaggaccaactaagtaaacggaagagtacttacaggacca 26452278  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 258
Target Start/End: Complemental strand, 26446630 - 26446576
Alignment:
Q  204 caaaaagttaacagaaatgaccaattaagtaaacggaagagtacttacaggacca 258  Q
    ||||||||||| ||||| |||||| ||||||||| ||||||||||||||||||||    
T  26446630 caaaaagttaatagaaaggaccaactaagtaaacagaagagtacttacaggacca 26446576  T

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Target: chr5 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 86 - 258
Target Start/End: Complemental strand, 21006382 - 21006211
Alignment:
Q  86 aataaaaccctaatttttgacatttcatgcccttttatattgatgacagtgatttgccatgtcctcaagtgattggccaacctggagtaccacatgttca 185  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||   |||| ||| ||    
T  21006382 aataaaaccctaatttttgacatttcatccccttttatattgctgatagtgatttgccatgtcctcaagtgattggccaacgtggacagccacttgtgca 21006283  T
Q  186 gagttaacgnnnnnnnnccaaaaagttaacagaaatgaccaattaagtaaacggaagagtacttacaggacca 258  Q
    |||||||||         |||||||||||| |||| || ||| |  ||||||||||||| |||||||||||||    
T  21006282 gagttaacgtttttttt-caaaaagttaactgaaaggatcaactgggtaaacggaagagaacttacaggacca 21006211  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 258
Target Start/End: Original strand, 21011799 - 21011853
Alignment:
Q  204 caaaaagttaacagaaatgaccaattaagtaaacggaagagtacttacaggacca 258  Q
    ||||||||||||||||| |||||| ||||||||| |||||||||| |||||||||    
T  21011799 caaaaagttaacagaaaggaccaactaagtaaacagaagagtactgacaggacca 21011853  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 124 - 192
Target Start/End: Original strand, 32960126 - 32960194
Alignment:
Q  124 attgatgacagtgatttgccatgtcctcaagtgattggccaacctggagtaccacatgttcagagttaa 192  Q
    |||| ||| |||||||| ||||||||||||||||||||||||| ||||| ||||||||| |||||||||    
T  32960126 attgctgagagtgattttccatgtcctcaagtgattggccaacatggagaaccacatgtgcagagttaa 32960194  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 258
Target Start/End: Complemental strand, 48332836 - 48332786
Alignment:
Q  208 aagttaacagaaatgaccaattaagtaaacggaagagtacttacaggacca 258  Q
    ||||||||||||| |||||| |||||||||||||||||| ||| |||||||    
T  48332836 aagttaacagaaaggaccaactaagtaaacggaagagtatttataggacca 48332786  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 258
Target Start/End: Original strand, 24501976 - 24502030
Alignment:
Q  204 caaaaagttaacagaaatgaccaattaagtaaacggaagagtacttacaggacca 258  Q
    ||||||||||||||||| || ||| |  ||||||||||||| |||||||||||||    
T  24501976 caaaaagttaacagaaaggatcaactgggtaaacggaagagaacttacaggacca 24502030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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