View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14082_high_13 (Length: 277)

Name: NF14082_high_13
Description: NF14082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14082_high_13
NF14082_high_13
[»] chr3 (4 HSPs)
chr3 (1-264)||(44995533-44995788)
chr3 (19-123)||(50034955-50035059)
chr3 (1-51)||(15493133-15493183)
chr3 (5-122)||(30688191-30688308)
[»] chr8 (8 HSPs)
chr8 (1-121)||(24431495-24431615)
chr8 (19-124)||(38584188-38584293)
chr8 (1-126)||(7991141-7991265)
chr8 (19-118)||(8607581-8607680)
chr8 (2-122)||(27393049-27393169)
chr8 (1-118)||(39810327-39810442)
chr8 (1-94)||(21352787-21352880)
chr8 (6-122)||(17745235-17745351)
[»] chr4 (7 HSPs)
chr4 (1-120)||(51392866-51392985)
chr4 (19-126)||(2112995-2113102)
chr4 (1-118)||(34564744-34564861)
chr4 (5-112)||(42383474-42383578)
chr4 (19-122)||(33527372-33527477)
chr4 (5-124)||(19410158-19410277)
chr4 (1-51)||(55347-55397)
[»] chr7 (2 HSPs)
chr7 (1-122)||(26012827-26012948)
chr7 (1-121)||(25037899-25038019)
[»] chr2 (5 HSPs)
chr2 (5-124)||(38902407-38902526)
chr2 (2-126)||(39212993-39213117)
chr2 (6-124)||(31204316-31204434)
chr2 (54-124)||(31184594-31184663)
chr2 (5-127)||(926121-926243)
[»] chr1 (2 HSPs)
chr1 (38-125)||(44335028-44335115)
chr1 (1-51)||(44334969-44335019)
[»] chr5 (2 HSPs)
chr5 (6-124)||(21368929-21369047)
chr5 (1-51)||(11958584-11958634)
[»] chr6 (1 HSPs)
chr6 (6-51)||(32360419-32360464)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 44995533 - 44995788
Alignment:
Q  1 caacatgttgaatgcatacaacatctctctcctccacatcatcattcaacataccattggagcacttccacttgttgaaggttgctttcaacatagcaat 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  44995533 caacatgttgaatgcattcaacatctctctcctccacatcatcattcaacataccattggagcacttccacttgttgaaggttgctttcaac-------- 44995624  T
Q  101 tcaacaccattggacatggtctaagaacagttgaatgtctgtttcttgcccttgatttactttgcttagaaaaatgcaagttggagagagatagaaagag 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44995625 tcaacaccattggacatggtctaagaacagttgaatttctgtttcttgcccttgatttactttgcttagaaaaatgcaagttggagagagatagaaagag 44995724  T
Q  201 ttagaaggatacttattgaaattaatcgacaacaatcaaaagcttgacatatccacacaattga 264  Q
    | ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  44995725 tgagaaggatacttattgaaattaaccgacagcaatcaaaagcttgacatatccacacaattga 44995788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 50034955 - 50035059
Alignment:
Q  19 caacatctctctcctccacatcatcattcaacat-accattggagcacttccacttgttgaaggttgctttcaacatagcaattcaacaccattggacat 117  Q
    |||| ||||| || |||||||||||||| ||||| |||||||||||| ||| |||||||||| ||||||||||||||  | ||| |||||||||||||||    
T  50034955 caacctctctttcatccacatcatcattaaacatcaccattggagcatttc-acttgttgaacgttgctttcaacatgcccattaaacaccattggacat 50035053  T
Q  118 ggtcta 123  Q
    ||||||    
T  50035054 ggtcta 50035059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 15493183 - 15493133
Alignment:
Q  1 caacatgttgaatgcatacaacatctctctcctccacatcatcattcaaca 51  Q
    ||||||||||||||||| |||||||||| |||||||||||||| |||||||    
T  15493183 caacatgttgaatgcattcaacatctctttcctccacatcatccttcaaca 15493133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 30688308 - 30688191
Alignment:
Q  5 atgttgaatgcatacaacatctctctcctccacatcatcattcaacat-accattggagcacttccacttgttgaaggttgctttcaacatagcaattca 103  Q
    ||||||||  ||| |||| ||||| || ||||||||||| |||||||  ||||||| |||| ||| || |||| || |||||||||||||||||| ||      
T  30688308 atgttgaaaccattcaacctctctttcttccacatcatccttcaacaccaccattgaagcatttc-acatgtttaatgttgctttcaacatagcattttc 30688210  T
Q  104 acaccattggacatggtct 122  Q
    |||||||||||| ||||||    
T  30688209 acaccattggacttggtct 30688191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 7e-55; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 24431615 - 24431495
Alignment:
Q  1 caacatgttgaatgcatacaacatctctctcctccacatcatcattcaacataccattggagcacttccacttgttgaaggttgctttcaacatagcaat 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24431615 caacatgttgaatgcattcaacatctctctcctccacatcatcattcaatataccattggagcacttccacttgttgaaggttgctttcaatatagcaat 24431516  T
Q  101 tcaacaccattggacatggtc 121  Q
    |||||||||||||||||||||    
T  24431515 tcaacaccattggacatggtc 24431495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 38584293 - 38584188
Alignment:
Q  19 caacatctctctcctccacatcatcattcaacataccattggagcacttccacttgttgaaggttgctttcaacatagcaattcaacaccattggacatg 118  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38584293 caacatctctctccttcacatcatcgttcaacacaccattggagcacttccacttgttgaaggttgctttcaacatagcaattcaacaccattggacatg 38584194  T
Q  119 gtctaa 124  Q
    ||||||    
T  38584193 gtctaa 38584188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 7991141 - 7991265
Alignment:
Q  1 caacatgttgaatgcatacaacatctctctcctccacatcatcattcaacataccattggagcacttccacttgttgaaggttgctttcaacatagcaat 100  Q
    |||||| |||||||||| |||||||||||||| |||||||||||||||||| ||||| ||| |||||||| |||||||||||||||||||| ||||||||    
T  7991141 caacatattgaatgcattcaacatctctctcccccacatcatcattcaacacaccat-ggaacacttccatttgttgaaggttgctttcaatatagcaat 7991239  T
Q  101 tcaacaccattggacatggtctaaga 126  Q
    ||||||||||||||||||||||||||    
T  7991240 tcaacaccattggacatggtctaaga 7991265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 8607680 - 8607581
Alignment:
Q  19 caacatctctctcctccacatcatcattcaacataccattggagcacttccacttgttgaaggttgctttcaacatagcaattcaacaccattggacatg 118  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  8607680 caacatctctctcctccacatcatcattcaacacaccattggagcacttccacttgttgaaagttactttcaacatagcaattcaacaccattggacatg 8607581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 2 - 122
Target Start/End: Original strand, 27393049 - 27393169
Alignment:
Q  2 aacatgttgaatgcatacaacatctctctcctccacatcatcattcaacataccattggagcacttccacttgttgaaggttgctttcaacatagcaatt 101  Q
    ||||||||||||  || |||| ||||| || ||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||    
T  27393049 aacatgttgaattgattcaacctctctttcttccacatcatcattcaacacaacattggagcacttccacatgttgaaggttgctttcaacatagcaatt 27393148  T
Q  102 caacaccattggacatggtct 122  Q
    |||||| |||| |||||||||    
T  27393149 caacactattgaacatggtct 27393169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 39810442 - 39810327
Alignment:
Q  1 caacatgttgaatgcatacaacatctctctcctccacatcatcattcaacataccattggagcacttccacttgttgaaggttgctttcaacatagcaat 100  Q
    ||||| ||||||||||| |||||||||||  ||||||||||||||  |||| |||||| |||||||||||||||||||||||||||||||||||| ||||    
T  39810442 caacaagttgaatgcattcaacatctctc--ctccacatcatcatcaaacacaccattagagcacttccacttgttgaaggttgctttcaacataacaat 39810345  T
Q  101 tcaacaccattggacatg 118  Q
    ||||||||||| ||||||    
T  39810344 tcaacaccattagacatg 39810327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 21352787 - 21352880
Alignment:
Q  1 caacatgttgaatgcatacaacatctctctcctccacatcatcattcaacataccattggagcacttccacttgttgaaggttgctttcaacat 94  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||| | || |||||||||||| ||| | ||||||||||||||||||||    
T  21352787 caacatattgaatgcattcaacatctctctcctccacatcatcattcaatacactattggagcactttcacctcttgaaggttgctttcaacat 21352880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 122
Target Start/End: Original strand, 17745235 - 17745351
Alignment:
Q  6 tgttgaatgcatacaacatctctctcctccacatcatcattcaacat-accattggagcacttccacttgttgaaggttgctttcaacatagcaattcaa 104  Q
    |||||||  ||| |||| ||||| || ||||||||| |||| ||||  |||||||||||| ||| |||||||||| ||||||||||||||| | ||| ||    
T  17745235 tgttgaaaccattcaacctctctttcatccacatcaccattaaacaccaccattggagcatttc-acttgttgaatgttgctttcaacatacccattaaa 17745333  T
Q  105 caccattggacatggtct 122  Q
    ||||||||||||||||||    
T  17745334 caccattggacatggtct 17745351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 51392866 - 51392985
Alignment:
Q  1 caacatgttgaatgcatacaacatctctctcctccacatcatcattcaacataccattggagcacttccacttgttgaaggttgctttcaacatagcaat 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  51392866 caacatgttgaatgcattcaacatctctctcctccacatcatcattcaacacaccattggagcacttccacttgttgaaggtagctttcaacatagcaat 51392965  T
Q  101 tcaacaccattggacatggt 120  Q
    ||||||||||||||||||||    
T  51392966 tcaacaccattggacatggt 51392985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 2112995 - 2113102
Alignment:
Q  19 caacatctctctcctccacatcatcattcaacataccattggagcacttccacttgttgaaggttgctttcaacatagcaattcaacaccattggacatg 118  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2112995 caacatctctctcctccacatcatcattcaacacaccattggagcactttcacttgttgaaggttgcttttaacatagcaattcaacaccattggacatg 2113094  T
Q  119 gtctaaga 126  Q
    ||||||||    
T  2113095 gtctaaga 2113102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 34564744 - 34564861
Alignment:
Q  1 caacatgttgaatgcatacaacatctctctcctccacatcatcattcaacataccattggagcacttccacttgttgaaggttgctttcaacatagcaat 100  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34564744 caacatgttgaatgcattcaacatctctctcctccacgtcatcattaaacacaccattggagcacttccacttgttgaaagttgctttcaacatagcaat 34564843  T
Q  101 tcaacaccattggacatg 118  Q
    |||||||||||| |||||    
T  34564844 tcaacaccattgaacatg 34564861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 42383578 - 42383474
Alignment:
Q  5 atgttgaatgcatacaacatctctctcctccacatcatcattcaacataccattggagcacttccacttgttgaaggttgctttcaacatagcaattcaa 104  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||   |||||||||||||| ||||||||||||||||||||||||||||||    
T  42383578 atgttgaatgcattcaacatctctctcctccacatcatcattcaacacacca---gagcacttccacttattgaaggttgctttcaacatagcaattcaa 42383482  T
Q  105 caccattg 112  Q
    ||| ||||    
T  42383481 cactattg 42383474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 33527372 - 33527477
Alignment:
Q  19 caacatctctctcctccacatcatcattcaacataccattggagcacttccacttgttgaaggttgctttcaac--atagcaattcaacaccattggaca 116  Q
    |||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||| |||    
T  33527372 caacatctttctccttcacatcatcattcaacacaccattggagcacttccacttgttgaaggttgctttcaacatatagcaattcaacgccattgaaca 33527471  T
Q  117 tggtct 122  Q
    ||||||    
T  33527472 tggtct 33527477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 19410158 - 19410277
Alignment:
Q  5 atgttgaatgcatacaacatctctctcctccacatcatcattcaacat-accattggagcacttccacttgttgaaggttgctttcaacatagcaattca 103  Q
    ||||||||  ||| |||| ||||| || ||||||||| | |||||||  |||||||||||| ||| || |||| || ||||||||||| |||||| ||      
T  19410158 atgttgaaaccattcaacctctctttcatccacatcacccttcaacaccaccattggagcatttc-acatgtttaatgttgctttcaagatagcattttc 19410256  T
Q  104 acaccattggacatggtctaa 124  Q
    |||||||||||| ||||||||    
T  19410257 acaccattggacttggtctaa 19410277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 55397 - 55347
Alignment:
Q  1 caacatgttgaatgcatacaacatctctctcctccacatcatcattcaaca 51  Q
    ||||||||||||||  | |||||||||| ||||||||||| ||||||||||    
T  55397 caacatgttgaatggtttcaacatctctttcctccacatcgtcattcaaca 55347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 26012948 - 26012827
Alignment:
Q  1 caacatgttgaatgcatacaacatctctctcctccacatcatcattcaacataccattggagcacttccacttgttgaaggttgctttcaacatagcaat 100  Q
    ||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  26012948 caacatgttgaatgcattcaacatctctctcttccacatcaacattcaacataccattggagcccttccacttgttgaaggttgctttgaacatagcaat 26012849  T
Q  101 tcaacaccattggacatggtct 122  Q
    ||||||||||||||||||||||    
T  26012848 tcaacaccattggacatggtct 26012827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 25038019 - 25037899
Alignment:
Q  1 caacatgttgaatgcatacaacatctctctcctccacatcatcattcaacataccattggagcacttccacttgttgaaggttgctttcaacatagcaat 100  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||    
T  25038019 caacatgttgaatgcattcaacatctctctccttcacatcatcattcaacacatcattggagcacttctacttgttgaaggttgctttcaacatagcaat 25037920  T
Q  101 tcaacaccattggacatggtc 121  Q
    |||||||||||||||||||||    
T  25037919 tcaacaccattggacatggtc 25037899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 38902407 - 38902526
Alignment:
Q  5 atgttgaatgcatacaacatctctctcctccacatcatcattcaacataccattggagcacttccacttgttgaaggttgctttcaacatagcaattcaa 104  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  38902407 atgttgaatgcattcaacatctctctcctccatatcatcattcaacacaccattggaacactttcacttgttgaaggttgctttcaacatagcaattcaa 38902506  T
Q  105 caccattggacatggtctaa 124  Q
    ||||||||||||||||||||    
T  38902507 caccattggacatggtctaa 38902526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 126
Target Start/End: Original strand, 39212993 - 39213117
Alignment:
Q  2 aacatgttgaatgcatacaacatctctctcctccacatcatcattcaacataccattggagcacttccacttgttgaaggttgctttcaacatagcaatt 101  Q
    ||||||||||||  || |||| ||||| || ||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||    
T  39212993 aacatgttgaattgattcaacctctctttcatccacatcatcattcaacacaccattggagcacttcaacatgttgaaggttgctttcaacatagcaatt 39213092  T
Q  102 caacaccattggacatggtctaaga 126  Q
    ||| |||||||||||||||||||||    
T  39213093 caataccattggacatggtctaaga 39213117  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 124
Target Start/End: Complemental strand, 31204434 - 31204316
Alignment:
Q  6 tgttgaatgcatacaacatctctctcctccacatcatcattcaacat-accattggagcacttccacttgttgaaggttgctttcaacatagcaattcaa 104  Q
    |||||||  ||| |||| ||||| || ||||||||| |||| ||||  |||||||||||| ||| |||||||||| ||||||||||||||| | ||| ||    
T  31204434 tgttgaaaccattcaacctctctttcatccacatcaccattaaacaccaccattggagcatttc-acttgttgaatgttgctttcaacatacccattaaa 31204336  T
Q  105 caccattggacatggtctaa 124  Q
    ||||||||||||||||||||    
T  31204335 caccattggacatggtctaa 31204316  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 124
Target Start/End: Complemental strand, 31184663 - 31184594
Alignment:
Q  54 ccattggagcacttccacttgttgaaggttgctttcaacatagcaattcaacaccattggacatggtctaa 124  Q
    ||||||||||| ||| |||||||||| ||||||||||||||| | ||| ||||||||||||||||||||||    
T  31184663 ccattggagcatttc-acttgttgaatgttgctttcaacatacccattaaacaccattggacatggtctaa 31184594  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 926243 - 926121
Alignment:
Q  5 atgttgaatgcatacaacatctctctcctccacatcatcattcaacat-accattggagcacttccacttgttgaaggttgctttcaacatagcaattca 103  Q
    ||||||||  ||| |||| |||||||| |||| |||| | |||||||  |||||||||||| ||  || |||| || ||||||||||||||| || ||      
T  926243 atgttgaaaccattcaacctctctctcatccagatcacccttcaacaccaccattggagcatttt-acatgtttaatgttgctttcaacataccattttc 926145  T
Q  104 acaccattggacatggtctaagaa 127  Q
    |||||||||||| |||||||||||    
T  926144 acaccattggacttggtctaagaa 926121  T

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Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 38 - 125
Target Start/End: Original strand, 44335028 - 44335115
Alignment:
Q  38 atcatcattcaacataccattggagcacttccacttgttgaaggttgctttcaacatagcaattcaacaccattggacatggtctaag 125  Q
    |||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44335028 atcatcattcaacacatcattggagcacttccacttgttgaatgttgctttcaacatagcaattcaacaccattggacatggtctaag 44335115  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 44334969 - 44335019
Alignment:
Q  1 caacatgttgaatgcatacaacatctctctcctccacatcatcattcaaca 51  Q
    ||||||||||||||||| |||||| ||||||||||| ||||||||||||||    
T  44334969 caacatgttgaatgcattcaacatttctctcctccatatcatcattcaaca 44335019  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 124
Target Start/End: Original strand, 21368929 - 21369047
Alignment:
Q  6 tgttgaatgcatacaacatctctctcctccacatcatcattcaacat-accattggagcacttccacttgttgaaggttgctttcaacatagcaattcaa 104  Q
    |||||||  ||| |||| ||||| || |||||||||||||| ||||  |||||||||||| ||| |||||||||| ||||||||||||||| | ||| ||    
T  21368929 tgttgaaaccattcaacctctctttcatccacatcatcattaaacaccaccattggagcatttc-acttgttgaatgttgctttcaacatacccattaaa 21369027  T
Q  105 caccattggacatggtctaa 124  Q
    | ||||||||||||||||||    
T  21369028 cgccattggacatggtctaa 21369047  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 11958584 - 11958634
Alignment:
Q  1 caacatgttgaatgcatacaacatctctctcctccacatcatcattcaaca 51  Q
    ||||||||||||||    |||||||||| ||||||||||||||||||||||    
T  11958584 caacatgttgaatggtctcaacatctctttcctccacatcatcattcaaca 11958634  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 32360419 - 32360464
Alignment:
Q  6 tgttgaatgcatacaacatctctctcctccacatcatcattcaaca 51  Q
    |||||||||  | ||||||||||||| |||||||||||||||||||    
T  32360419 tgttgaatggtttcaacatctctctcttccacatcatcattcaaca 32360464  T

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