View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14082_high_17 (Length: 240)
Name: NF14082_high_17
Description: NF14082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14082_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 47364321 - 47364118
Alignment:
| Q |
17 |
atcagaccctacattcaaaactaaaaatcactcaagagtcatctgcagactgacaaacagggaggtagtatgtatcaagctgccagtatctgtgtttgac |
116 |
Q |
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| T |
47364321 |
atcagaccctacattcaaaactaaaaatcactca-gagtcatctgcagactgacaaacagggaggtagtatgtatcaagctgccagtatctgtgtttgac |
47364223 |
T |
|
| Q |
117 |
accttcccaaacttcttcccccaaacaatccttaacaggcaatggaattaattgtgtggaataccccaaattctcaagctcaagagataccaagtggcag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
47364222 |
accttcccaaacttcttcccccaaacaatccttaacaggcaatggaattaattgtgtggaataccccatattctcaagctcaagagataccaagtggcag |
47364123 |
T |
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| Q |
217 |
taaac |
221 |
Q |
| |
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||||| |
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| T |
47364122 |
taaac |
47364118 |
T |
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