View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14082_high_3 (Length: 501)
Name: NF14082_high_3
Description: NF14082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14082_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 24 - 338
Target Start/End: Complemental strand, 46010036 - 46009743
Alignment:
| Q |
24 |
cacattaaaaatggaaaacgacatttgttttaaaatatttatttaactcgcaacaaaattaatattcatttttaagcatatgaattatttaatgtttgtt |
123 |
Q |
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| T |
46010036 |
cacattaaaaatggaaaacgacatttgttttaaaatatttatttaactcgcaacaaaattaatattcatttttaagcatatgaattattta--------- |
46009946 |
T |
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| Q |
124 |
tgacttaattaatctaacgcacagtaaaagttttagtcttataaaagtgaaaaataaataaatcactgcagggaaaactaacgannnnnnnacaaagacc |
223 |
Q |
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| T |
46009945 |
------------tctaacgcacaataaaagttttagtcttataaaagtgaaaaataaataaatcactgcagggaaaactaacgatttttttacaaagacc |
46009858 |
T |
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| Q |
224 |
aatgtctttgacaccaaaccaaactaagcatatggcttaaataatgacacatgtttaattgtatgcacaaacgatttattgattaacatcacaatttctc |
323 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46009857 |
aatgtctttgacaccaaaccaaactaagcacatggcttaaataatgacacatgtttaattgtatgcacaaacgatttattgattaacatcacaatttctc |
46009758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 331 - 483
Target Start/End: Complemental strand, 46009695 - 46009543
Alignment:
| Q |
331 |
tgattatgtctcttatataaacatgaaaaagatagtacgtaccttgacaaaaaccaaaggagaaaaagcaagatcaggaccaagcacatgatcatataca |
430 |
Q |
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| T |
46009695 |
tgattatgtctaatatataaacatgaaaaagatagtacgtaccttgacaaaaaccaaaggagaaaatgcaagatcaggaccaagcacatgatcatataca |
46009596 |
T |
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| Q |
431 |
agttcatcaatagagtactctttctcatcaaaccattcacgcagtgtattctc |
483 |
Q |
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| T |
46009595 |
agttcatcaacagagtactctttctcatccaaccattcacgcagtgttttctc |
46009543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 363 - 468
Target Start/End: Complemental strand, 15922298 - 15922193
Alignment:
| Q |
363 |
tagtacgtaccttgacaaaaaccaaaggagaaaaagcaagatcaggaccaagcacatgatcatatacaagttcatcaatagagtactctttctcatcaaa |
462 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| || ||||| || |
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| T |
15922298 |
tagtacgtaccttgacaaaaaccaaaggagaaaaagcaagatcaggaccaagcacatgatcatgaacaagttcatcaactgaatactcattttcatccaa |
15922199 |
T |
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| Q |
463 |
ccattc |
468 |
Q |
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|||||| |
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| T |
15922198 |
ccattc |
15922193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 366 - 423
Target Start/End: Complemental strand, 13114593 - 13114536
Alignment:
| Q |
366 |
tacgtaccttgacaaaaaccaaaggagaaaaagcaagatcaggaccaagcacatgatc |
423 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
13114593 |
tacgtaccttgacaaaaaccaatggagaaaaagcaagatcaggaccaagcacatgatc |
13114536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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