View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14082_high_5 (Length: 461)
Name: NF14082_high_5
Description: NF14082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14082_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 11 - 445
Target Start/End: Original strand, 33832863 - 33833300
Alignment:
| Q |
11 |
cagagaatcagaaaagaaagatcttgttttcattggtccaaatctgaataacagaaaaatccaccnnnnnnntcaaactcattaattttttaccgttaac |
110 |
Q |
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| T |
33832863 |
cagagaatcagaaaagaaagatctcgttttcattggtccaaatctgaataacagaaaaatccaccaaaaaaatcaaactcattaattttttaccgttaac |
33832962 |
T |
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| Q |
111 |
taactctttgaactagaaagtttgaacagaaatgttcaaaattggtttagtttgggtttggttgcagaatgcacacgcgtgagggatcagaaatgaaaca |
210 |
Q |
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| T |
33832963 |
taactctttgaactagaaagtttgaacagaaatgttcaaaattggtttagtttgggtttggttgcagaatgcacacgcgtgagggatcagaaatgaaaca |
33833062 |
T |
|
| Q |
211 |
gtgctgacacagaaacggtttcaatttcaattttcaagtatacgaacccacgaggggcactatagttacatagttgaagt---gaacacgtttcaatttc |
307 |
Q |
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| T |
33833063 |
gtgctgacacagaaacggtttcggtttcaattttcaagtatacgaacccacgaggggcactatagttacatagttgaagtgaagaagacgtttcaatttc |
33833162 |
T |
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| Q |
308 |
atggttcaagtttcttaaacaaaatcatactttctctaaatttatttatttatttataaacataattaactaaccttacaaannnnnnnnnnnaaaatta |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
33833163 |
atggttcaagtttcttaaacaaaatcatactttctctaaatttatttatttatttataaacataattaaccaaccttacaaatattttttaaaaaaatta |
33833262 |
T |
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| Q |
408 |
agtttatttcattgttttcattttatataaaagttatt |
445 |
Q |
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|||||||||||||||||| ||||||||||||||||||| |
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| T |
33833263 |
agtttatttcattgttttgattttatataaaagttatt |
33833300 |
T |
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