View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14082_low_16 (Length: 244)
Name: NF14082_low_16
Description: NF14082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14082_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 24984254 - 24984483
Alignment:
| Q |
1 |
acattggtacacattaggacaataattttgtaaatgtaagtacttattttgggag----tggttttttagtctttccatgcatcatgaactattttaatt |
96 |
Q |
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| T |
24984254 |
acattggtacacattaggacaataattttgtaaatgtaagtacttattttgggagagagtggttttttagtctttccatggatcatgaactattttaatt |
24984353 |
T |
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| Q |
97 |
gtttaactttttctgataattaaacttaatgaattcnnnnnnngaaaatctaaattagatagcattttcttatatctaaaacaaggatcaaacattattt |
196 |
Q |
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| T |
24984354 |
gtttaactttttctgataattaaacttaatgaattatttttttgaaaatctaaattagatagcattttcttatatctaaaacaaggatcaaacattattt |
24984453 |
T |
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| Q |
197 |
actctagaaaaacttttgaaatgtagaaaatat |
229 |
Q |
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||||||| ||||||||||||||||||||||| |
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| T |
24984454 |
actctag---aacttttgaaatgtagaaaatat |
24984483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 24990084 - 24990313
Alignment:
| Q |
1 |
acattggtacacattaggacaataattttgtaaatgtaagtacttattttgggag----tggttttttagtctttccatgcatcatgaactattttaatt |
96 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24990084 |
acattgggacacattaggacaataattttgtaaatgtaagtacttattttgggagagagtggttttttagtctttccatggatcatgaactattttaatt |
24990183 |
T |
|
| Q |
97 |
gtttaactttttctgataattaaacttaatgaattcnnnnnnngaaaatctaaattagatagcattttcttatatctaaaacaaggatcaaacattattt |
196 |
Q |
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| T |
24990184 |
gtttaactttttctgataattaaacttaatgaattatttttttgaaaatctaaattagatagcattttcttatatctaaaacaaggatcaaacattattt |
24990283 |
T |
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| Q |
197 |
actctagaaaaacttttgaaatgtagaaaatat |
229 |
Q |
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||||||| ||||||||||||||||||||||| |
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| T |
24990284 |
actctag---aacttttgaaatgtagaaaatat |
24990313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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