View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14082_low_18 (Length: 220)
Name: NF14082_low_18
Description: NF14082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14082_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 24 - 204
Target Start/End: Complemental strand, 8442690 - 8442510
Alignment:
| Q |
24 |
aaagagagagaaatttagaatttaaagaagaagaactataaaacgcaagaggttgnnnnnnnnnnnnnggatctataacccataaatcaacaagagatcc |
123 |
Q |
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| T |
8442690 |
aaagagagagaaattgagagattcaagaagaagaacgataaaacacaagagattgacaactaaaaaaaggatctagaacccataaatcaacaagagatcc |
8442591 |
T |
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| Q |
124 |
gcctctcccactacagaaatgccaatggcgatggagatttgtcaaatggggagaagaataatgaaagatgaaggaaaggag |
204 |
Q |
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| T |
8442590 |
gcctctcccactacagaaatgtcaatggtgatggagatttgtcaaacggggagaagaataatgaaagatgaaggaaaggag |
8442510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 92 - 204
Target Start/End: Complemental strand, 8440722 - 8440609
Alignment:
| Q |
92 |
ggatctataacccataaatcaacaagagatccgcctctcccactacagaaatgccaatggcgatggagatttgtcaaat-ggggagaagaataatgaaag |
190 |
Q |
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| T |
8440722 |
ggatctagaacccataaatcaacaagagatccgcctctcccactacataattgccaatggcgatggagatttgtcaaatgggggagaagaataatgaaag |
8440623 |
T |
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| Q |
191 |
atgaaggaaaggag |
204 |
Q |
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| T |
8440622 |
atgaaggaaaggag |
8440609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 8440817 - 8440751
Alignment:
| Q |
1 |
gttgaagcgttagagtttttgcgaaagagagagaaatttagaatttaaagaagaagaactataaaac |
67 |
Q |
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| T |
8440817 |
gttgaagcgttagagcgtcttcgaaagagagagaaattgagagattcaagaagaagaacgataaaac |
8440751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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