View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14082_low_2 (Length: 505)
Name: NF14082_low_2
Description: NF14082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14082_low_2 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 240 - 505
Target Start/End: Complemental strand, 32483534 - 32483269
Alignment:
| Q |
240 |
gctgatagatatgaaatatggtggagattttaagcttgaacataaacacacgcaatcgatacggttggattgttagcagatatagttccaaaactatgtc |
339 |
Q |
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| T |
32483534 |
gctgatagatatgaaatatggtggagattttaagcttgaacataaacacacgcaatcgatacggttggattgttagcagatatagttccaaaactatgtc |
32483435 |
T |
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| Q |
340 |
atcagtatttggctatctttttcagagaattcctctaaaccaaaagattctctctttgtttttgctttcctttatttcaccactcactctcttaaccata |
439 |
Q |
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| T |
32483434 |
atcagtatttggctatctttttcagagaattcctctaaaccaaaagattctctctttgtatttgctttcctttatttcaccactcactctcttaaccata |
32483335 |
T |
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| Q |
440 |
acactgaaaagggtcaatcacggaaactgctagtgcttctgattaatacaccttacaccttatgtc |
505 |
Q |
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| T |
32483334 |
acactgaaaagggtcaatcacggaaactgctagtgcttctgattaatacaccttacaccttatgtc |
32483269 |
T |
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Target: chr8; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 32483781 - 32483602
Alignment:
| Q |
1 |
caattaatattctagaataatctaaacatagaattaaagaatcacaaagaaaatgatggtagctagtgattgaggtgagaatatgtgtggatgtgaaaga |
100 |
Q |
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| T |
32483781 |
caattaatattctagaataatctaaacatagaattaaagaatcacaaagaaaatgatggtagctagtgattgaggtgagaatatgtgtggatgtgaaaga |
32483682 |
T |
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| Q |
101 |
gagagggaatgtgctaagaaagaggaggaaaaacagtttctttcttggtcagggctactaaataacagtgatgtttttca |
180 |
Q |
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| T |
32483681 |
gagagggaatgtgctaagaaagaggaggaaaaacagtttctttcttggtcagggctactaaataacagtgatgtttttca |
32483602 |
T |
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