View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14082_low_6 (Length: 441)

Name: NF14082_low_6
Description: NF14082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14082_low_6
NF14082_low_6
[»] chr1 (34 HSPs)
chr1 (14-441)||(24989591-24990021)
chr1 (146-427)||(24983439-24983724)
chr1 (14-154)||(24980833-24980973)
chr1 (14-86)||(47235505-47235577)
chr1 (14-99)||(27262755-27262840)
chr1 (18-98)||(9433809-9433889)
chr1 (14-85)||(7444943-7445014)
chr1 (19-83)||(52698463-52698527)
chr1 (20-85)||(26478063-26478128)
chr1 (27-96)||(39527014-39527083)
chr1 (20-97)||(44698047-44698124)
chr1 (332-379)||(34043776-34043823)
chr1 (206-257)||(34459507-34459558)
chr1 (179-241)||(18512543-18512605)
chr1 (179-241)||(23233991-23234053)
chr1 (19-77)||(26816574-26816632)
chr1 (187-233)||(44493445-44493491)
chr1 (181-222)||(12148588-12148629)
chr1 (179-243)||(3229680-3229744)
chr1 (19-83)||(41884992-41885056)
chr1 (60-99)||(26761226-26761265)
chr1 (52-99)||(42724388-42724435)
chr1 (178-229)||(50119011-50119062)
chr1 (179-241)||(7180582-7180644)
chr1 (179-241)||(18911891-18911953)
chr1 (179-241)||(27579442-27579504)
chr1 (23-97)||(44529273-44529347)
chr1 (14-92)||(50015568-50015646)
chr1 (14-99)||(49805980-49806065)
chr1 (179-235)||(8780808-8780864)
chr1 (205-241)||(12116199-12116235)
chr1 (39-83)||(37599667-37599711)
chr1 (339-379)||(41712510-41712550)
chr1 (179-223)||(49251409-49251453)
[»] chr8 (28 HSPs)
chr8 (26-99)||(29912153-29912226)
chr8 (14-99)||(32615850-32615935)
chr8 (21-99)||(24585840-24585918)
chr8 (14-99)||(13244685-13244770)
chr8 (23-83)||(42964815-42964875)
chr8 (179-257)||(13105131-13105209)
chr8 (179-241)||(33810680-33810742)
chr8 (179-241)||(34873126-34873188)
chr8 (179-241)||(36035147-36035209)
chr8 (179-241)||(38730523-38730585)
chr8 (14-96)||(28626650-28626732)
chr8 (179-241)||(44673616-44673678)
chr8 (14-99)||(13521718-13521803)
chr8 (14-99)||(13611253-13611338)
chr8 (14-83)||(34085350-34085418)
chr8 (19-85)||(41235844-41235906)
chr8 (19-99)||(7859137-7859217)
chr8 (179-241)||(5570934-5570996)
chr8 (179-241)||(8183360-8183422)
chr8 (179-229)||(30659990-30660040)
chr8 (53-99)||(36178464-36178510)
chr8 (179-241)||(37708731-37708793)
chr8 (23-99)||(5984190-5984264)
chr8 (179-239)||(9813011-9813071)
chr8 (45-96)||(14548203-14548257)
chr8 (189-241)||(21303439-21303491)
chr8 (14-66)||(31331371-31331423)
chr8 (330-378)||(44964245-44964293)
[»] chr6 (18 HSPs)
chr6 (20-99)||(30326688-30326767)
chr6 (14-99)||(24396784-24396869)
chr6 (179-241)||(18904305-18904367)
chr6 (338-379)||(30648009-30648050)
chr6 (194-241)||(32142004-32142051)
chr6 (179-241)||(32621550-32621612)
chr6 (19-84)||(2248741-2248806)
chr6 (14-99)||(31597534-31597619)
chr6 (179-239)||(3294804-3294864)
chr6 (192-232)||(32212371-32212411)
chr6 (194-241)||(1368155-1368202)
chr6 (179-222)||(11636700-11636743)
chr6 (179-241)||(33646875-33646937)
chr6 (14-87)||(342974-343047)
chr6 (14-86)||(2801302-2801375)
chr6 (23-96)||(6067531-6067604)
chr6 (179-235)||(13656306-13656362)
chr6 (179-223)||(26528604-26528648)
[»] chr2 (23 HSPs)
chr2 (14-96)||(40141960-40142042)
chr2 (19-99)||(11074519-11074599)
chr2 (19-99)||(34335032-34335111)
chr2 (14-85)||(37426533-37426604)
chr2 (179-241)||(18254629-18254691)
chr2 (52-97)||(40083476-40083521)
chr2 (14-85)||(19204406-19204477)
chr2 (14-92)||(1944761-1944839)
chr2 (179-241)||(5947906-5947968)
chr2 (179-240)||(17777132-17777193)
chr2 (179-241)||(7717573-7717635)
chr2 (179-241)||(13975166-13975228)
chr2 (339-377)||(43281522-43281560)
chr2 (179-220)||(16261369-16261410)
chr2 (19-96)||(19341100-19341177)
chr2 (19-92)||(31549752-31549825)
chr2 (179-241)||(32221007-32221071)
chr2 (179-223)||(10262776-10262820)
chr2 (39-99)||(17897845-17897905)
chr2 (209-241)||(24439694-24439726)
chr2 (63-99)||(37038359-37038395)
chr2 (179-223)||(44187741-44187785)
chr2 (179-251)||(45119665-45119737)
[»] chr5 (24 HSPs)
chr5 (19-76)||(8611775-8611832)
chr5 (14-96)||(19608793-19608875)
chr5 (178-241)||(18928759-18928822)
chr5 (179-241)||(3740994-3741056)
chr5 (14-99)||(13203138-13203223)
chr5 (21-99)||(42035753-42035832)
chr5 (53-99)||(6562643-6562689)
chr5 (179-241)||(8241090-8241152)
chr5 (179-241)||(16720574-16720636)
chr5 (179-241)||(15241436-15241498)
chr5 (179-233)||(18101953-18102007)
chr5 (191-241)||(20282862-20282912)
chr5 (179-241)||(23937901-23937963)
chr5 (179-241)||(25729408-25729470)
chr5 (37-99)||(34362499-34362561)
chr5 (179-241)||(36564390-36564452)
chr5 (179-241)||(41319419-41319481)
chr5 (19-85)||(41360905-41360971)
chr5 (37-82)||(2220772-2220817)
chr5 (178-243)||(39799996-39800061)
chr5 (179-258)||(17891809-17891889)
chr5 (19-99)||(20975556-20975636)
chr5 (179-243)||(27545117-27545181)
chr5 (179-223)||(31556855-31556899)
[»] chr4 (42 HSPs)
chr4 (26-99)||(51834778-51834851)
chr4 (19-99)||(54639699-54639779)
chr4 (19-99)||(3775354-3775434)
chr4 (19-83)||(22478036-22478100)
chr4 (178-257)||(25224511-25224589)
chr4 (14-84)||(37626970-37627040)
chr4 (179-241)||(41137888-41137950)
chr4 (14-99)||(24157776-24157860)
chr4 (19-99)||(5497760-5497840)
chr4 (19-99)||(11123477-11123557)
chr4 (14-96)||(8753021-8753104)
chr4 (19-85)||(21240154-21240220)
chr4 (179-241)||(30057262-30057324)
chr4 (179-241)||(32339364-32339426)
chr4 (179-241)||(36099151-36099213)
chr4 (179-243)||(28715730-28715794)
chr4 (14-70)||(48051717-48051773)
chr4 (39-83)||(56128625-56128669)
chr4 (178-241)||(624519-624582)
chr4 (178-241)||(13161786-13161848)
chr4 (179-242)||(13578432-13578495)
chr4 (178-241)||(38848089-38848151)
chr4 (179-242)||(42381080-42381143)
chr4 (207-241)||(5803544-5803578)
chr4 (179-241)||(9477405-9477466)
chr4 (179-241)||(10402481-10402543)
chr4 (179-241)||(23176690-23176751)
chr4 (179-241)||(23778793-23778855)
chr4 (14-96)||(26009691-26009773)
chr4 (179-241)||(47890735-47890797)
chr4 (179-241)||(47929285-47929347)
chr4 (60-97)||(39753953-39753990)
chr4 (177-238)||(50578594-50578655)
chr4 (45-85)||(6336334-6336374)
chr4 (39-99)||(25098930-25098990)
chr4 (179-223)||(32885725-32885769)
chr4 (179-219)||(40666836-40666876)
chr4 (59-99)||(48178743-48178783)
chr4 (179-223)||(52031244-52031288)
chr4 (189-241)||(54534876-54534928)
chr4 (47-99)||(54622988-54623040)
chr4 (179-223)||(56546463-56546507)
[»] chr3 (27 HSPs)
chr3 (23-97)||(31732095-31732169)
chr3 (14-99)||(43767304-43767389)
chr3 (179-241)||(25883956-25884018)
chr3 (19-96)||(54457492-54457569)
chr3 (36-87)||(26554235-26554286)
chr3 (14-96)||(15496148-15496230)
chr3 (195-241)||(16886638-16886684)
chr3 (179-241)||(27329900-27329962)
chr3 (179-241)||(51879135-51879197)
chr3 (194-241)||(14795166-14795213)
chr3 (178-217)||(18020270-18020309)
chr3 (178-241)||(26880216-26880278)
chr3 (178-241)||(46844940-46845002)
chr3 (178-241)||(49443392-49443454)
chr3 (179-241)||(15085652-15085714)
chr3 (179-241)||(29373417-29373479)
chr3 (179-241)||(31586987-31587049)
chr3 (187-241)||(32429795-32429849)
chr3 (179-241)||(44625193-44625255)
chr3 (204-241)||(9114076-9114113)
chr3 (190-239)||(10828521-10828570)
chr3 (14-99)||(23512750-23512835)
chr3 (19-96)||(42461318-42461395)
chr3 (14-90)||(25985394-25985470)
chr3 (179-223)||(43566810-43566854)
chr3 (179-223)||(43774222-43774266)
chr3 (14-86)||(53248634-53248706)
[»] chr7 (31 HSPs)
chr7 (14-99)||(11663016-11663100)
chr7 (19-99)||(24423448-24423528)
chr7 (20-99)||(3237308-3237387)
chr7 (11-90)||(12837911-12837990)
chr7 (19-96)||(34004782-34004859)
chr7 (179-241)||(13702065-13702127)
chr7 (19-73)||(30424883-30424937)
chr7 (24-90)||(41072400-41072466)
chr7 (179-240)||(10690887-10690948)
chr7 (338-379)||(20520494-20520535)
chr7 (179-240)||(24188510-24188571)
chr7 (194-242)||(18503447-18503495)
chr7 (179-242)||(9712165-9712228)
chr7 (53-96)||(23223306-23223349)
chr7 (53-96)||(23237386-23237429)
chr7 (14-99)||(8902974-8903060)
chr7 (179-241)||(21875596-21875658)
chr7 (179-241)||(27162263-27162325)
chr7 (199-241)||(38697245-38697287)
chr7 (179-241)||(46645749-46645811)
chr7 (179-241)||(46758282-46758344)
chr7 (179-241)||(48693569-48693631)
chr7 (14-99)||(7711892-7711977)
chr7 (191-236)||(25672371-25672416)
chr7 (194-239)||(47144957-47145002)
chr7 (179-223)||(14818379-14818423)
chr7 (179-223)||(15265377-15265421)
chr7 (178-230)||(27788308-27788360)
chr7 (178-230)||(27791464-27791516)
chr7 (179-239)||(30806155-30806215)
chr7 (179-223)||(41417289-41417333)
[»] scaffold0010 (1 HSPs)
scaffold0010 (177-242)||(236325-236389)
[»] scaffold0954 (1 HSPs)
scaffold0954 (52-96)||(52-96)
[»] scaffold0074 (1 HSPs)
scaffold0074 (60-99)||(29750-29789)
[»] scaffold0283 (1 HSPs)
scaffold0283 (330-378)||(10379-10427)


Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 14 - 441
Target Start/End: Original strand, 24989591 - 24990021
Alignment:
Q  14 aatataaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaattctaagataactttc 113  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24989591 aatataaacaattgataatttttatgtagattaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaattctaagataactttc 24989690  T
Q  114 aatgtgttagcatttcccataattataatatgcataatttggtctatgtgaccttaacattgcat----tatgcaggggtcggagttcaaaccacagaca 209  Q
    ||||||| ||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||    ||||||||||| || ||| |||||||| |||    
T  24989691 aatgtgtcagtgtttcccataattataatatgcataatttggtccatgtgaccttaacattgcataatatatgcaggggttgg-gtttaaaccacaaaca 24989789  T
Q  210 ccccactttttcacatttaaaatgtgtgagcttcggtcattaagctacgtagctactagaccaaaaaacaatgttttttcaagcatgatttacaatcttc 309  Q
    || || |||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||| |  |||| |||||||||||||||||||     
T  24989790 cctcattttttcacatttaaaatgtgtgagcttcggtcattaggctacgtgtctactagaccaaaaaacaaagcatttttaagcatgatttacaatcttg 24989889  T
Q  310 ttaagattgtctaaaaacattctccaaaatatttatatcaaaatcatttttattttaacctataacaaaccatcttagtctttagaaacaaatctataaa 409  Q
    ||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  24989890 ttaagattgtccaacaacattctccaaaatatttatatcaaaattatttttattttaacctataacaaactatcttagtctttggaaacaaatctataaa 24989989  T
Q  410 tagtctcttaaaattagtacacattagttatt 441  Q
    |||||||||||||||||||||||||| |||||    
T  24989990 tagtctcttaaaattagtacacattaattatt 24990021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 146 - 427
Target Start/End: Original strand, 24983439 - 24983724
Alignment:
Q  146 cataatttggtctatgtgaccttaacattgcat----tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||||| ||||| |||||||||| |||    ||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||| |||||    
T  24983439 cataatttggtccatgtggccttaacatttcataatatatgcagcggtcggggttcaaaccacagacatcccactttttcacatttaaaatgtgcgagct 24983538  T
Q  242 tcggtcattaagctacgtagctactagaccaaaaaacaatgttttttcaagcatgatttacaatcttcttaagattgtctaaaaacattctccaaaatat 341  Q
    || ||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  24983539 tcagtcattaggctacttggctactagaccaaaaaacaatgttttttcaagcatgatttacaatcttcttaagattgtctaacaacattctccgaaatat 24983638  T
Q  342 ttatatcaaaatcatttttattttaacctataacaaaccatcttagtctttagaaacaaatctataaatagtctcttaaaattagt 427  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24983639 ttatatcaaaatcatttttattttaacctataagaaacgatcttagtctttagaaacaaatctataaatagtctcttaaaattagt 24983724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 24980833 - 24980973
Alignment:
Q  14 aatataaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaattctaagataactttc 113  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24980833 aatataaacaattgataatttttatgtagattaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaattctaagataactttc 24980932  T
Q  114 aatgtgttagcatttcccataattataatatgcataatttg 154  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  24980933 aatgtgttagcatttccaataattataatatgcataatttg 24980973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 47235577 - 47235505
Alignment:
Q  14 aatataaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaatt 86  Q
    |||| ||||||||||||| ||||||||| |||||||||||||||  ||||||||| |||||||||||||||||    
T  47235577 aatagaaacaattgataactttcatgtaaataaagttgctttttaatgtttcaatttgttgaatacacaaatt 47235505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 27262755 - 27262840
Alignment:
Q  14 aatataaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    |||| ||||||||||||| ||| ||||||| ||| || ||||||  ||||| ||||||||||||||||||||||||||| ||||||    
T  27262755 aatagaaacaattgataacttttatgtagaaaaaattactttttaatgttttaatgtgttgaatacacaaattctaagacaaaatt 27262840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 9433889 - 9433809
Alignment:
Q  18 taaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaat 98  Q
    |||||||||||||| || ||| |||| ||||||||| |||| |||||||||||||||||||||||||| | |||| |||||    
T  9433889 taaacaattgataacttgcatatagaaaaagttgctctttgatgtttcaatgtgttgaatacacaaatccgaagacaaaat 9433809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 7445014 - 7444943
Alignment:
Q  14 aatataaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaat 85  Q
    |||| ||| ||||||||| ||||||||| | |||||||||||||| | ||||||||||||||||||||||||    
T  7445014 aatagaaataattgataactttcatgtataaaaagttgctttttgatatttcaatgtgttgaatacacaaat 7444943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 52698527 - 52698463
Alignment:
Q  19 aaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaa 83  Q
    ||||||||||||| ||| ||| ||| ||||||| |||||||| ||||||||||||||||||||||    
T  52698527 aaacaattgataacttttatggagaaaaagttgttttttgttatttcaatgtgttgaatacacaa 52698463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 26478128 - 26478063
Alignment:
Q  20 aacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaat 85  Q
    |||||||||||||||| ||||||| ||||||  |||||| ||||| |||||||||| |||||||||    
T  26478128 aacaattgataatttttatgtagaaaaagttattttttgatgttttaatgtgttgagtacacaaat 26478063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 39527083 - 39527014
Alignment:
Q  27 gataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaa 96  Q
    ||||| ||| ||||||| |||||| |||||||||||||||||| ||||||| ||||| ||| ||||||||    
T  39527083 gataaattttatgtagaaaaagttcctttttgttgtttcaatgggttgaatgcacaatttccaagataaa 39527014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 44698124 - 44698047
Alignment:
Q  20 aacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaa 97  Q
    |||||||||||| ||| |||| || |||||| ||||||  ||||||||| |||||||||||||| ||| |||||||||    
T  44698124 aacaattgataaattttatgttgaaaaagttactttttaatgtttcaatatgttgaatacacaacttccaagataaaa 44698047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 379
Target Start/End: Original strand, 34043776 - 34043823
Alignment:
Q  332 tccaaaatatttatatcaaaatcatttttattttaacctataacaaac 379  Q
    |||||| |||||||||||||||| ||||||||||||| ||||||||||    
T  34043776 tccaaattatttatatcaaaatcctttttattttaacttataacaaac 34043823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 257
Target Start/End: Complemental strand, 34459558 - 34459507
Alignment:
Q  206 gacaccccactttttcacatttaaaatgtgtgagcttcggtcattaagctac 257  Q
    ||||| |||||||||||||||||||||||||||||| |||||| || |||||    
T  34459558 gacactccactttttcacatttaaaatgtgtgagctccggtcactaggctac 34459507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 18512605 - 18512543
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||| ||| |||| |||| | |||||||||||| | |||||||||||||||||||||    
T  18512605 tatgcaggggccggggttcgaaccccggacaccccacttctccacatttaaaatgtgtgagct 18512543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 23233991 - 23234053
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||||||| |||| |||| ||||||||| |||| | |||||||| ||||||||||||    
T  23233991 tatgcaggggtcggggttcgaaccccagacaccctacttctccacatttataatgtgtgagct 23234053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 26816574 - 26816632
Alignment:
Q  19 aaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaat 77  Q
    ||||||||||||| |||||||||| | || ||||||| || ||||||||||||||||||    
T  26816574 aaacaattgataactttcatgtagtttaaattgctttgtgatgtttcaatgtgttgaat 26816632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 44493445 - 44493491
Alignment:
Q  187 ggtcggagttcaaaccacagacaccccactttttcacatttaaaatg 233  Q
    |||||||||||||||| |||||||||||||||| || ||||||||||    
T  44493445 ggtcggagttcaaacctcagacaccccacttttccatatttaaaatg 44493491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 12148629 - 12148588
Alignment:
Q  181 tgcaggggtcggagttcaaaccacagacaccccactttttca 222  Q
    |||||||||||||||||||||| |||||||||||||| ||||    
T  12148629 tgcaggggtcggagttcaaaccccagacaccccacttattca 12148588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 3229744 - 3229680
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagcttc 243  Q
    |||| |||||| || ||||||||| | |||| ||||||| || ||||||||||||||||||||||    
T  3229744 tatgtaggggttggggttcaaaccccggacatcccacttctttacatttaaaatgtgtgagcttc 3229680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 41885056 - 41884992
Alignment:
Q  19 aaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaa 83  Q
    ||||||||||||| ||| || ||||| ||||||||||||  ||||||||||| |||| |||||||    
T  41885056 aaacaattgataaattttatatagattaagttgctttttaatgtttcaatgtcttgattacacaa 41884992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 26761226 - 26761265
Alignment:
Q  60 tgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  26761226 tgttttaatgtgttgaatacacaaattttaagataaaatt 26761265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 42724435 - 42724388
Alignment:
Q  52 ctttttgttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    ||||||||| ||| |||||||||||||||||| || ||||||||||||    
T  42724435 ctttttgttattttaatgtgttgaatacacaatttttaagataaaatt 42724388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 50119011 - 50119062
Alignment:
Q  178 ttatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaa 229  Q
    |||||||||||||||||||| |||| | |||||||||||| | |||||||||    
T  50119011 ttatgcaggggtcggagttcgaaccccggacaccccacttctccacatttaa 50119062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 7180644 - 7180582
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||| |||||||| |||| | |||||||||||| | |||| ||||| ||||||||||    
T  7180644 tatgcaggggccggagttcgaaccccggacaccccacttctccacaattaaattgtgtgagct 7180582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 18911891 - 18911953
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||||| | |||| |||| | |||||||||||  | |||||||||||||||||||||    
T  18911891 tatgcaggggtcagggttcgaaccccggacaccccactcctccacatttaaaatgtgtgagct 18911953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 27579504 - 27579442
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||| || ||||| ||||  |||||||||| || | |||||||||||||||||||||    
T  27579504 tatgcaggggccgaagttcgaaccctagacaccccatttctccacatttaaaatgtgtgagct 27579442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 44529347 - 44529273
Alignment:
Q  23 aattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaa 97  Q
    ||||||||| ||| |||| || |||||| ||||||  ||||| ||| |||||||||||||| || ||||||||||    
T  44529347 aattgataaattttatgttgaaaaagttactttttaatgttttaatatgttgaatacacaacttttaagataaaa 44529273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 50015568 - 50015646
Alignment:
Q  14 aatataaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaaga 92  Q
    |||| ||||||||||||| |||  |||| | |||||| ||||||| | ||| ||||||||||||| |||||||| ||||    
T  50015568 aatagaaacaattgataaattttttgtataaaaagttactttttgatttttgaatgtgttgaatatacaaattccaaga 50015646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 49805980 - 49806065
Alignment:
Q  14 aatataaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    |||| |||||||| |||| ||| ||||||| |||||| ||||||  | ||| |||||||||||| ||||||||  |||| ||||||    
T  49805980 aatagaaacaatttataacttttatgtagaaaaagttacttttttatattttaatgtgttgaatgcacaaatttcaagacaaaatt 49806065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 8780808 - 8780864
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtg 235  Q
    |||||||||| ||  ||||||||| | |||||||||||| | |||||||||||||||    
T  8780808 tatgcaggggccgaggttcaaacctcggacaccccacttctccacatttaaaatgtg 8780864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 12116199 - 12116235
Alignment:
Q  205 agacaccccactttttcacatttaaaatgtgtgagct 241  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  12116199 agacaccccacttcttcacatttataatgtgtgagct 12116235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 37599667 - 37599711
Alignment:
Q  39 gtagataaagttgctttttgttgtttcaatgtgttgaatacacaa 83  Q
    ||||| |||||| ||||||| |||||||||||||||||| |||||    
T  37599667 gtagaaaaagttactttttgctgtttcaatgtgttgaatgcacaa 37599711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 379
Target Start/End: Original strand, 41712510 - 41712550
Alignment:
Q  339 tatttatatcaaaatcatttttattttaacctataacaaac 379  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  41712510 tatttatatcaaaatcatttttcttttaatctattacaaac 41712550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 49251453 - 49251409
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcac 223  Q
    |||||||||||||| |||| |||| |||||||||||||| |||||    
T  49251453 tatgcaggggtcggggttcgaaccccagacaccccacttattcac 49251409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 29912226 - 29912153
Alignment:
Q  26 tgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    |||||| || ||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||    
T  29912226 tgataacttccatgtagataaagttgctttttgatgtttcaatgagttgaatacacaaattttaagataaaatt 29912153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 32615935 - 32615850
Alignment:
Q  14 aatataaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    |||| ||||||||||||| ||||||||| ||||||||| |||||  |||||||||||||||||||||| ||||| |||||||||||    
T  32615935 aatagaaacaattgataactttcatgtaaataaagttgttttttaatgtttcaatgtgttgaatacacgaattccaagataaaatt 32615850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 24585918 - 24585840
Alignment:
Q  21 acaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    ||||||||||| ||||||||| ||||  |||||||||| ||||| ||||||||||||| |||||||  |||||||||||    
T  24585918 acaattgataactttcatgtatataagattgctttttgatgttttaatgtgttgaataaacaaatttcaagataaaatt 24585840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 13244770 - 13244685
Alignment:
Q  14 aatataaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    |||| ||||||||||||| ||| ||||||| ||| ||| |||||| | ||||||| | ||||||||||||||||||| ||||||||    
T  13244770 aatagaaacaattgataacttttatgtagacaaaattgttttttgatatttcaatatattgaatacacaaattctaaaataaaatt 13244685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 42964875 - 42964815
Alignment:
Q  23 aattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaa 83  Q
    ||||||||| ||||||||||| ||||||  |||||| ||||||||||||||||||||||||    
T  42964875 aattgataactttcatgtagaaaaagttattttttgatgtttcaatgtgttgaatacacaa 42964815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 179 - 257
Target Start/End: Original strand, 13105131 - 13105209
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagcttcggtcattaagctac 257  Q
    |||||| ||| ||| |||| |||| |||||||||||||| | ||||||||||||||||||||| | ||||||| |||||    
T  13105131 tatgcaagggccggggttcgaacctcagacaccccacttctccacatttaaaatgtgtgagctccagtcattatgctac 13105209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 33810680 - 33810742
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||| ||| ||||||||| | |||||||||||| | |||||||||||||||||||||    
T  33810680 tatgcaggggccggggttcaaaccccggacaccccacttctccacatttaaaatgtgtgagct 33810742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 34873126 - 34873188
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||||||| |||| |||| | |||||||||||| | |||||||||||||||||||||    
T  34873126 tatgcaggggtcggggttcgaacctcggacaccccacttctccacatttaaaatgtgtgagct 34873188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 36035209 - 36035147
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||||||| |||| |||| | |||||||||||| | |||||||||||||||||||||    
T  36035209 tatgcaggggtcggggttcgaacctcggacaccccacttctccacatttaaaatgtgtgagct 36035147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 38730585 - 38730523
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    ||||||||| |||||||| ||||| |||||||||||||| | |||||||||||| ||||||||    
T  38730585 tatgcagggatcggagtttaaaccccagacaccccacttctccacatttaaaatatgtgagct 38730523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 28626650 - 28626732
Alignment:
Q  14 aatataaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaa 96  Q
    |||| ||| ||||| ||| ||||||||| ||||||||| |||||| ||||||||||| ||||| ||| |||||  ||||||||    
T  28626650 aatagaaataattgttaagtttcatgtaaataaagttgttttttgatgtttcaatgtattgaagacataaatttcaagataaa 28626732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 44673678 - 44673616
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||||||| |||| |||| ||||||| |||||||| |||| ||||| ||||||||||    
T  44673678 tatgcaggggtcggggttcgaaccccagacactccacttttccacaattaaattgtgtgagct 44673616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 13521718 - 13521803
Alignment:
Q  14 aatataaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    |||| ||| ||||||||| ||||||||| ||||| ||  |||||  ||||||||||||| |||||||||||||  || ||||||||    
T  13521718 aatagaaataattgataactttcatgtaaataaaattattttttaatgtttcaatgtgtagaatacacaaatttcaaaataaaatt 13521803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 13611253 - 13611338
Alignment:
Q  14 aatataaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    |||| ||| ||||||||| ||||||||| ||||| ||  |||||  ||||||||||||| |||||||||||||  || ||||||||    
T  13611253 aatagaaataattgataactttcatgtaaataaaattattttttaatgtttcaatgtgtagaatacacaaatttcaaaataaaatt 13611338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 34085418 - 34085350
Alignment:
Q  14 aatataaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaa 83  Q
    |||| ||| ||||||||| ||||||| |||||| ||| ||||||| || |||||||||||||||||||||    
T  34085418 aatagaaataattgataactttcatggagataa-gttactttttgatgattcaatgtgttgaatacacaa 34085350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 41235844 - 41235906
Alignment:
Q  19 aaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaat 85  Q
    ||||||||||||| ||||||||||| ||||||| |||||| ||||    ||||||||||||||||||    
T  41235844 aaacaattgataaatttcatgtagaaaaagttgttttttgatgtt----tgtgttgaatacacaaat 41235906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 7859137 - 7859217
Alignment:
Q  19 aaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    ||||||||||||  ||| |||| || |||||| ||||||  ||||| |||||||||||||||||| ||  |||||||||||    
T  7859137 aaacaattgatatattttatgttgaaaaagttactttttaatgttttaatgtgttgaatacacaacttaaaagataaaatt 7859217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 5570934 - 5570996
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    ||||||||||||||||||| |||| | |||||||||||| | |||| ||||| | ||||||||    
T  5570934 tatgcaggggtcggagttcgaaccccggacaccccacttctccacaattaaattatgtgagct 5570996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 8183360 - 8183422
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||| ||| |||| |||| |||||| ||||||| | || ||||||||||||||||||    
T  8183360 tatgcaggggccggggttcgaaccccagacaacccacttctccatatttaaaatgtgtgagct 8183422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 30659990 - 30660040
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaa 229  Q
    |||||||||||||| ||||||||| | ||||||||||| |||||| |||||    
T  30659990 tatgcaggggtcggggttcaaaccccggacaccccactatttcacctttaa 30660040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 36178510 - 36178464
Alignment:
Q  53 tttttgttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    |||||||||||||||||| |||||| ||||| || ||||||||||||    
T  36178510 tttttgttgtttcaatgtcttgaatgcacaatttttaagataaaatt 36178464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 37708731 - 37708793
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||| ||| |||| |||| | |||| ||||||| | |||||||||||||||||||||    
T  37708731 tatgcaggggccggggttcgaaccccggacatcccacttctccacatttaaaatgtgtgagct 37708793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 5984264 - 5984190
Alignment:
Q  23 aattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    ||||||||| ||| ||||||| |||||   ||||||||||||||||||||||||| || || |||||| ||||||||    
T  5984264 aattgataaattttatgtagaaaaagtaa-tttttgttgtttcaatgtgttgaatgca-aatttctaaaataaaatt 5984190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 9813071 - 9813011
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgag 239  Q
    ||||||| ||||||||||| || | |||||||| ||||| | |||||||||||||| ||||    
T  9813071 tatgcagaggtcggagttcgaatctcagacacctcacttctccacatttaaaatgtatgag 9813011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 14548203 - 14548257
Alignment:
Q  45 aaagttgctttttg---ttgtttcaatgtgttgaatacacaaattctaagataaa 96  Q
    ||||||||||||||   || |||||| ||||||||||||||||||| ||||||||    
T  14548203 aaagttgctttttgatattatttcaacgtgttgaatacacaaattccaagataaa 14548257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 21303491 - 21303439
Alignment:
Q  189 tcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    ||||||||| ||||||||||||| ||||| | ||||| |||||||| ||||||    
T  21303491 tcggagttcgaaccacagacacctcacttctccacatataaaatgtttgagct 21303439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 31331371 - 31331423
Alignment:
Q  14 aatataaacaattgataattttcatgtagataaagttgctttttgttgtttca 66  Q
    |||| |||||||||||||||||||| || | |||||||||||||  |||||||    
T  31331371 aataaaaacaattgataattttcatatataaaaagttgcttttttatgtttca 31331423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 378
Target Start/End: Original strand, 44964245 - 44964293
Alignment:
Q  330 tctccaaaatatttatatcaaaatcatttttattttaacctataacaaa 378  Q
    |||| ||| ||||||||||||| ||| ||||||||||| ||||||||||    
T  44964245 tctctaaattatttatatcaaattcacttttattttaatctataacaaa 44964293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 30326767 - 30326688
Alignment:
Q  20 aacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    |||||||||||| ||||||||||| ||||||| | |||| |||||||||||||||||||||||||| | |||||||||||    
T  30326767 aacaattgataactttcatgtagaaaaagttgttctttgatgtttcaatgtgttgaatacacaaatcccaagataaaatt 30326688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 24396784 - 24396869
Alignment:
Q  14 aatataaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    |||| ||||||||||||| |||||| || ||||||||| |||||  ||||||||||| |||||||||| |||||||||||||||||    
T  24396784 aatagaaacaattgataactttcatataaataaagttgttttttaatgtttcaatgttttgaatacacgaattctaagataaaatt 24396869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 18904305 - 18904367
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||||||| |||| |||| | |||||||||||| | |||||||||||||||||||||    
T  18904305 tatgcaggggtcggggttcgaaccccggacaccccacttctccacatttaaaatgtgtgagct 18904367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 379
Target Start/End: Complemental strand, 30648050 - 30648009
Alignment:
Q  338 atatttatatcaaaatcatttttattttaacctataacaaac 379  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  30648050 atatttatatcaaaatcacttttattttaacctataacaaac 30648009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 32142051 - 32142004
Alignment:
Q  194 gttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||| |||| |||||||||||||||| |||||||||||||||||||||    
T  32142051 gttcgaaccccagacaccccacttttccacatttaaaatgtgtgagct 32142004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 32621612 - 32621550
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||| ||| |||| || | |||||||||||||| | |||||||||||||||||||||    
T  32621612 tatgcaggggccggggttcgaatcccagacaccccacttctccacatttaaaatgtgtgagct 32621550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 2248806 - 2248741
Alignment:
Q  19 aaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaa 84  Q
    |||||| |||||| ||| |||| || |||||| ||||||  |||||||||||||||||||||||||    
T  2248806 aaacaaatgataagtttgatgttgaaaaagttactttttaatgtttcaatgtgttgaatacacaaa 2248741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 31597534 - 31597619
Alignment:
Q  14 aatataaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    |||| |||||||| |||| ||| ||||||| |||||| ||||||  ||||| |||||||||||| ||||||||  |||| ||||||    
T  31597534 aataaaaacaatttataacttttatgtagaaaaagttactttttaatgttttaatgtgttgaatgcacaaatttcaagacaaaatt 31597619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 3294804 - 3294864
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgag 239  Q
    |||||||||||||| |||| |||| | |||||||||||| |||||| ||||| ||||||||    
T  3294804 tatgcaggggtcggggttcgaaccccggacaccccacttcttcacaattaaattgtgtgag 3294864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 32212411 - 32212371
Alignment:
Q  192 gagttcaaaccacagacaccccactttttcacatttaaaat 232  Q
    ||||||||||| |||||||||||||| ||||||||||||||    
T  32212411 gagttcaaaccccagacaccccacttcttcacatttaaaat 32212371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 1368202 - 1368155
Alignment:
Q  194 gttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    ||||||||  |||||||||||||| | |||||||||||||||||||||    
T  1368202 gttcaaactccagacaccccacttctccacatttaaaatgtgtgagct 1368155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 11636700 - 11636743
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttca 222  Q
    ||||||||||||||||||| |||| | |||||||||||||||||    
T  11636700 tatgcaggggtcggagttcgaaccccggacaccccactttttca 11636743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 33646875 - 33646937
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||||||| |||| |||| | |||||||||||| | |||| ||||| ||||||||||    
T  33646875 tatgcaggggtcggggttcgaacctcggacaccccacttctccacaattaaattgtgtgagct 33646937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 343047 - 342974
Alignment:
Q  14 aatataaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattc 87  Q
    |||| ||||||||||||| ||| ||| | | ||||||  |||||  ||||||||||||||||||||| ||||||    
T  343047 aatagaaacaattgataacttttatgcataaaaagttattttttaatgtttcaatgtgttgaatacataaattc 342974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 2801375 - 2801302
Alignment:
Q  14 aatataaacaattgataattttcatgtagataaa-gttgctttttgttgtttcaatgtgttgaatacacaaatt 86  Q
    |||| ||||||||||||| ||| ||||||| ||| ||| ||||||  ||||| ||||||||||||||| |||||    
T  2801375 aatagaaacaattgataacttttatgtagaaaaaagttactttttaatgttttaatgtgttgaatacataaatt 2801302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 6067531 - 6067604
Alignment:
Q  23 aattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaa 96  Q
    ||||| ||| ||||||||||| |||||| ||||||  |  ||||||  ||||||||||||| ||||||||||||    
T  6067531 aattgttaaatttcatgtagaaaaagtttctttttaatcgttcaataagttgaatacacaatttctaagataaa 6067604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 13656306 - 13656362
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtg 235  Q
    |||||||||||||  |||  |||| |||||||||||||| |||||||| ||||||||    
T  13656306 tatgcaggggtcgatgtttgaaccccagacaccccacttcttcacattaaaaatgtg 13656362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 26528604 - 26528648
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcac 223  Q
    |||||||||||||| ||||||||| | |||||||||||| |||||    
T  26528604 tatgcaggggtcggggttcaaacctcggacaccccacttattcac 26528648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 40141960 - 40142042
Alignment:
Q  14 aatataaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaa 96  Q
    |||| |||||| | |||| |||||||||||||||||||||||||| |||||||||| |||||||| ||||||| |||||||||    
T  40141960 aatagaaacaaattataactttcatgtagataaagttgctttttggtgtttcaatgagttgaatatacaaattttaagataaa 40142042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 11074519 - 11074599
Alignment:
Q  19 aaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    ||||||| ||||| || |||| ||| |||||||||||||  |||||||||||||||||||||||||| | |||| ||||||    
T  11074519 aaacaatagataacttccatgcagaaaaagttgcttttttatgtttcaatgtgttgaatacacaaatcccaagaaaaaatt 11074599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 34335111 - 34335032
Alignment:
Q  19 aaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    |||||||| ||||||||| |||||||||| || ||||||| ||||||||||| ||||||| | ||||| ||||||||||||    
T  34335111 aaacaattaataattttcgtgtagataaaattactttttgatgtttcaatgt-ttgaatatataaattttaagataaaatt 34335032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 37426533 - 37426604
Alignment:
Q  14 aatataaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaat 85  Q
    |||| |||||||  |||| ||||||||||| ||| |||||||||| | ||||||||||||||||||||||||    
T  37426533 aatagaaacaatccataactttcatgtagaaaaaattgctttttgatatttcaatgtgttgaatacacaaat 37426604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 18254629 - 18254691
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||| ||| |||| |||  |||||||||||||| |||||||||||||||||||||||    
T  18254629 tatgcaggggccggggttcgaactccagacaccccacttcttcacatttaaaatgtgtgagct 18254691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 40083521 - 40083476
Alignment:
Q  52 ctttttgttgtttcaatgtgttgaatacacaaattctaagataaaa 97  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||    
T  40083521 ctttttgttgtttcaatgtattgaatacacaatttctaagataaaa 40083476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 19204477 - 19204406
Alignment:
Q  14 aatataaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaat 85  Q
    |||| ||||||||||||||||| |||| || ||||||  |||||  ||||||||||||||||||||| ||||    
T  19204477 aataaaaacaattgataatttttatgttgaaaaagttatttttttatgtttcaatgtgttgaatacataaat 19204406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 1944839 - 1944761
Alignment:
Q  14 aatataaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaaga 92  Q
    |||||||||||||||||| ||| ||  ||| ||| || ||||||  ||||||||||| |||||||||||||||| ||||    
T  1944839 aatataaacaattgataacttttatacagaaaaaattactttttaatgtttcaatgtattgaatacacaaattccaaga 1944761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 5947906 - 5947968
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||||||| |||| |||| | |||||||||||  | |||||||||||||||||||||    
T  5947906 tatgcaggggtcggggttcgaaccccggacaccccactcctccacatttaaaatgtgtgagct 5947968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 17777193 - 17777132
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagc 240  Q
    |||||||||||||| |||| |||| | |||||||||||| | ||||||||||||||| ||||    
T  17777193 tatgcaggggtcggggttcgaaccccggacaccccacttctccacatttaaaatgtgcgagc 17777132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 7717635 - 7717573
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||||||| |||| |||  | ||||| |||||| | |||||||||||||||||||||    
T  7717635 tatgcaggggtcggggttcgaacttcggacactccacttctccacatttaaaatgtgtgagct 7717573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 13975166 - 13975228
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    ||||||||||||||||||| |||  | ||||||||| || |||||| ||||| ||||||||||    
T  13975166 tatgcaggggtcggagttcgaactccggacaccccatttcttcacaattaaattgtgtgagct 13975228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 377
Target Start/End: Complemental strand, 43281560 - 43281522
Alignment:
Q  339 tatttatatcaaaatcatttttattttaacctataacaa 377  Q
    ||||||||||||||||| ||||||||||| |||||||||    
T  43281560 tatttatatcaaaatcacttttattttaatctataacaa 43281522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 16261369 - 16261410
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccacttttt 220  Q
    |||||||||||| |||||| |||| |||||||||||||||||    
T  16261369 tatgcaggggtcagagttcgaaccccagacaccccacttttt 16261410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 19341100 - 19341177
Alignment:
Q  19 aaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaa 96  Q
    ||||||| |||||  |||||||| | || ||||||||||  ||||| |||||||| ||||||||||||  ||||||||    
T  19341100 aaacaatcgataacattcatgtaaaaaatgttgcttttttatgttttaatgtgttaaatacacaaatttcaagataaa 19341177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 31549752 - 31549825
Alignment:
Q  19 aaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaaga 92  Q
    ||||| ||||||| ||| ||||| | |||||||||||||| ||||||||| | || |||||| |||| ||||||    
T  31549752 aaacacttgataactttaatgtaaaaaaagttgctttttgatgtttcaatatattaaatacataaatcctaaga 31549825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 32221007 - 32221071
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacattt--aaaatgtgtgagct 241  Q
    |||||||||| ||| |||| |||| | |||||||||||||| |||||||  ||||||||||||||    
T  32221007 tatgcaggggccggggttcgaacctcggacaccccacttttccacatttaaaaaatgtgtgagct 32221071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 10262776 - 10262820
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcac 223  Q
    |||||||||||||| |||| |||| |||||||||||||| |||||    
T  10262776 tatgcaggggtcggggttcgaaccccagacaccccacttattcac 10262820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 17897845 - 17897905
Alignment:
Q  39 gtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    ||||| ||| || ||||||||||||| ||| |||||||| ||||| || ||||||||||||    
T  17897845 gtagaaaaaattactttttgttgttttaatatgttgaatgcacaatttttaagataaaatt 17897905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 24439726 - 24439694
Alignment:
Q  209 accccactttttcacatttaaaatgtgtgagct 241  Q
    ||||||||| |||||||||||||||||||||||    
T  24439726 accccacttattcacatttaaaatgtgtgagct 24439694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 37038395 - 37038359
Alignment:
Q  63 ttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    |||||| |||| |||||||||||||||||||||||||    
T  37038395 ttcaatatgtttaatacacaaattctaagataaaatt 37038359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 44187741 - 44187785
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcac 223  Q
    |||||||||||||| |||| |||| |||||||||||||| |||||    
T  44187741 tatgcaggggtcggggttcgaaccccagacaccccacttattcac 44187785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 45119737 - 45119665
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagcttcggtcatta 251  Q
    ||||||||||||||||||| |||| | ||||| ||| || | || ||||||||||||| |||| | |||||||    
T  45119737 tatgcaggggtcggagttcgaacctcggacactccatttctccatatttaaaatgtgtaagctcctgtcatta 45119665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 8611775 - 8611832
Alignment:
Q  19 aaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaa 76  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  8611775 aaacaattgataattttcatgtagaaaaagttgctttttgatgtttcaatgtgttgaa 8611832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 19608875 - 19608793
Alignment:
Q  14 aatataaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaa 96  Q
    |||| ||| ||||||||||||| ||||||| |||||| ||||||  ||||||||||||||||||| |||||||| ||||||||    
T  19608875 aatagaaataattgataatttttatgtagaaaaagttactttttaatgtttcaatgtgttgaatagacaaattccaagataaa 19608793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 18928759 - 18928822
Alignment:
Q  178 ttatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    ||||||||||||||| |||| |||||| |||||| ||||||| |||||||||| ||||||||||    
T  18928759 ttatgcaggggtcggtgttcgaaccacggacacctcacttttccacatttaaattgtgtgagct 18928822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 3740994 - 3741056
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||||||| |||| |||| | |||||||||||| | |||||||||||||||||||||    
T  3740994 tatgcaggggtcggggttcgaaccccggacaccccacttctccacatttaaaatgtgtgagct 3741056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 13203138 - 13203223
Alignment:
Q  14 aatataaacaattgataattttcatgtagataaagtt-gctttttgttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    |||| ||| ||||||||||||||||||||| ||||||   |||||  |||||||||||||||||| |||||||||||| ||||||||    
T  13203138 aataaaaataattgataattttcatgtagaaaaagttatttttttaatgtttcaatgtgttgaat-cacaaattctaaaataaaatt 13203223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 42035832 - 42035753
Alignment:
Q  21 acaattgataattttcatgtagataaagttgcttttt-gttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    ||||||||||||||| ||||| |||||||||||||||  |  |||||||||||| ||||||||| ||  |||||||||||    
T  42035832 acaattgataatttttatgtaaataaagttgctttttaatattttcaatgtgttaaatacacaattttcaagataaaatt 42035753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 6562689 - 6562643
Alignment:
Q  53 tttttgttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    |||||| ||||||||||||||||||||||||||| ||| ||||||||    
T  6562689 tttttgatgtttcaatgtgttgaatacacaaattttaaaataaaatt 6562643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 8241090 - 8241152
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||| ||||||| |||| |||| | |||||||||||| | |||||||||||||||||||||    
T  8241090 tatgcaagggtcggggttcgaaccccggacaccccacttctccacatttaaaatgtgtgagct 8241152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 16720636 - 16720574
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||||||| ||||||||  | |||||||||||| |||||||||||||| || |||||    
T  16720636 tatgcaggggtcggggttcaaacaccggacaccccacttcttcacatttaaaatatgcgagct 16720574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 15241436 - 15241498
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||||||| |||| |||| | |||||||||||| | |||| ||||| ||||||||||    
T  15241436 tatgcaggggtcggggttcgaacctcggacaccccacttctccacaattaaattgtgtgagct 15241498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 18102007 - 18101953
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatg 233  Q
    |||||||||| |||||||| |||| |||||||||||||| ||||| || ||||||    
T  18102007 tatgcaggggccggagttcgaaccccagacaccccacttattcaccttaaaaatg 18101953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 20282912 - 20282862
Alignment:
Q  191 ggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    ||||||| |||| | ||||| |||||||| |||||||||||||||||||||    
T  20282912 ggagttccaacctcggacacaccacttttccacatttaaaatgtgtgagct 20282862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 23937963 - 23937901
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||| ||| |||| |||| | |||||||||||  | |||||||||||||||||||||    
T  23937963 tatgcaggggccggggttcgaaccccggacaccccactcctccacatttaaaatgtgtgagct 23937901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 25729470 - 25729408
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||||||| |||| |||| ||||||| |||||| | |||| ||||| ||||||||||    
T  25729470 tatgcaggggtcggggttcgaaccccagacactccacttctccacaattaaattgtgtgagct 25729408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 34362499 - 34362561
Alignment:
Q  37 atgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    ||||||| |||||  ||||||||||||||||||| |||||| || || ||||| |||||||||    
T  34362499 atgtagaaaaagtcactttttgttgtttcaatgtattgaatgcataatttctacgataaaatt 34362561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 36564452 - 36564390
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    ||||| |||| |||||||| |||||| |||||||||| | | || ||||||||||||||||||    
T  36564452 tatgctggggccggagttcgaaccacggacaccccacctctccatatttaaaatgtgtgagct 36564390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 41319481 - 41319419
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    ||||||||||||||||||| |||| | ||||| |||||| | |||| ||||| ||||||||||    
T  41319481 tatgcaggggtcggagttcgaaccccggacactccacttctccacaattaaattgtgtgagct 41319419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 41360905 - 41360971
Alignment:
Q  19 aaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaat 85  Q
    ||||||||||||| ||| ||||||| || ||||| ||||| ||||||||| |||| |||| ||||||    
T  41360905 aaacaattgataacttttatgtagaaaatgttgccttttgatgtttcaatatgttaaatatacaaat 41360971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 2220772 - 2220817
Alignment:
Q  37 atgtagataaagttgctttttgttgtttcaatgtgttgaatacaca 82  Q
    ||||||| |||||| |||||| | ||||||||||||||||||||||    
T  2220772 atgtagaaaaagtttctttttatagtttcaatgtgttgaatacaca 2220817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 39800061 - 39799996
Alignment:
Q  178 ttatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagcttc 243  Q
    |||||||||||  || | || |||| | |||||||||||| | |||||||||||||||||||||||    
T  39800061 ttatgcaggggcaggggctcgaacccctgacaccccacttctccacatttaaaatgtgtgagcttc 39799996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 258
Target Start/End: Complemental strand, 17891889 - 17891809
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcaca-tttaaaatgtgtgagcttcggtcattaagctacg 258  Q
    |||||||||| ||| |||| |||| | |||||||||||| | |||| ||||||||||||||||| | | || |||||||||    
T  17891889 tatgcaggggccggggttcgaaccccggacaccccacttctccacattttaaaatgtgtgagctccagccactaagctacg 17891809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 20975636 - 20975556
Alignment:
Q  19 aaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    ||||||||||||| || ||||| || ||||||| || ||| ||||||||| |||| ||||||| ||| | || ||||||||    
T  20975636 aaacaattgataacttacatgttgaaaaagttgtttgttgatgtttcaatatgttcaatacacgaatcccaaaataaaatt 20975556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 27545181 - 27545117
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagcttc 243  Q
    |||||| ||||||  ||||||| | | |||||| ||||| |||| ||||||||||||||||||||    
T  27545181 tatgcaagggtcgaggttcaaatctcggacacctcacttcttcatatttaaaatgtgtgagcttc 27545117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 31556855 - 31556899
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcac 223  Q
    ||||||||||||||||||| |||| | |||||||||||| |||||    
T  31556855 tatgcaggggtcggagttcgaaccccggacaccccacttattcac 31556899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 51834778 - 51834851
Alignment:
Q  26 tgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    |||||| |||||||||||||||||||||||||| |||||||| | ||||||||||||||||  |||||||||||    
T  51834778 tgataactttcatgtagataaagttgctttttggtgtttcaacgagttgaatacacaaatttcaagataaaatt 51834851  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 54639699 - 54639779
Alignment:
Q  19 aaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    ||||||||||||  ||||||||||| |||||||||||||| ||||||||| |||| ||||||||||| | || ||||||||    
T  54639699 aaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatttgttcaatacacaaatcccaaaataaaatt 54639779  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 3775434 - 3775354
Alignment:
Q  19 aaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    |||||||||||| |||| ||||||| || |||| |||||| |||||||||||||| |||| |||||||  |||||||||||    
T  3775434 aaacaattgatagtttttatgtagaaaatgttgttttttgatgtttcaatgtgtttaatatacaaattacaagataaaatt 3775354  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 22478100 - 22478036
Alignment:
Q  19 aaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaa 83  Q
    ||||||||||||| ||| ||| ||| ||||||| |||||||| ||||||||||||||||||||||    
T  22478100 aaacaattgataacttttatggagaaaaagttggtttttgttatttcaatgtgttgaatacacaa 22478036  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 257
Target Start/End: Original strand, 25224511 - 25224589
Alignment:
Q  178 ttatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagcttcggtcattaagctac 257  Q
    |||||||||||||||||||| |||| | |||||||||||| |||| |||| | ||||||||||||| | |||||||||||    
T  25224511 ttatgcaggggtcggagttcgaacctcggacaccccacttcttcatattt-atatgtgtgagcttcagccattaagctac 25224589  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 37627040 - 37626970
Alignment:
Q  14 aatataaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaa 84  Q
    |||| ||||||||||||| ||| ||||||| |||||| ||||||  ||||| |||||||||||||||||||    
T  37627040 aatagaaacaattgataacttttatgtagaaaaagttactttttaatgtttaaatgtgttgaatacacaaa 37626970  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 41137950 - 41137888
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    ||||||||||| || |||| ||||||||||||||||||| |||| ||||||||||| ||||||    
T  41137950 tatgcaggggttggggttcgaaccacagacaccccacttcttcatatttaaaatgtttgagct 41137888  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 24157776 - 24157860
Alignment:
Q  14 aatataaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    |||| ||| ||||||||| ||||||  | |||||||||||||||| ||||| |||||||||||||||||| ||| || ||||||||    
T  24157776 aataaaaataattgataactttcataga-ataaagttgctttttgatgttttaatgtgttgaatacacaagttcaaaaataaaatt 24157860  T

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Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 5497840 - 5497760
Alignment:
Q  19 aaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    ||||| ||||||| ||| ||||||| |||||| ||||||| ||||||| ||| || |||||| ||||| ||||||||||||    
T  5497840 aaacagttgataacttttatgtagaaaaagttactttttgatgtttcattgtattaaatacataaattttaagataaaatt 5497760  T

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Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 11123557 - 11123477
Alignment:
Q  19 aaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    |||||||| |||||||  ||||||| ||  ||| |||||| ||||| ||| |||||||||||||||||||| |||||||||    
T  11123557 aaacaattaataatttctatgtagaaaagattgatttttgatgttttaatatgttgaatacacaaattctatgataaaatt 11123477  T

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Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 8753021 - 8753104
Alignment:
Q  14 aatataaacaattgataattttcatgtagataaagttgctttttg-ttgtttcaatgtgttgaatacacaaattctaagataaa 96  Q
    |||| ||| ||||||||| ||| ||||  | |||||||||||||| || ||| ||||||||||||||||||||| |||||||||    
T  8753021 aatagaaataattgataactttaatgtgtaaaaagttgctttttgattattttaatgtgttgaatacacaaattttaagataaa 8753104  T

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Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 21240220 - 21240154
Alignment:
Q  19 aaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaat 85  Q
    ||||||||||||| ||||| ||||| ||||||| |||||  | ||||||||||||||||| ||||||    
T  21240220 aaacaattgataactttcacgtagaaaaagttgttttttaatatttcaatgtgttgaatatacaaat 21240154  T

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Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 30057262 - 30057324
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||||||| ||||||||| | |||||||||||| | |||| ||||| ||||||||||    
T  30057262 tatgcaggggtcggggttcaaaccccggacaccccacttctccacaattaaattgtgtgagct 30057324  T

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Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 32339364 - 32339426
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||| ||||||| ||||||||| |||||||||||||| ||  |||||||||||| ||||||    
T  32339364 tatgcaagggtcggggttcaaaccccagacaccccacttctttgcatttaaaatgtctgagct 32339426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 36099213 - 36099151
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||| ||| |||| |||| | |||||||||||| | |||||||||||||||||||||    
T  36099213 tatgcaggggccggggttcgaaccccggacaccccacttctccacatttaaaatgtgtgagct 36099151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 243
Target Start/End: Original strand, 28715730 - 28715794
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagcttc 243  Q
    |||||||||| ||| |||| |||| | ||||| |||||| | |||||||||||||||||||||||    
T  28715730 tatgcaggggccggggttcgaaccccggacactccacttctccacatttaaaatgtgtgagcttc 28715794  T

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Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 48051773 - 48051717
Alignment:
Q  14 aatataaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgt 70  Q
    |||| ||| ||||||||| ||| ||||||| |||||| |||||||||||||||||||    
T  48051773 aatagaaataattgataaattttatgtagaaaaagttactttttgttgtttcaatgt 48051717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 56128625 - 56128669
Alignment:
Q  39 gtagataaagttgctttttgttgtttcaatgtgttgaatacacaa 83  Q
    ||||| |||||| |||||||||||||||||||||||||| |||||    
T  56128625 gtagaaaaagttactttttgttgtttcaatgtgttgaatgcacaa 56128669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 624519 - 624582
Alignment:
Q  178 ttatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||||  || |||| |||| | |||||||||||| | |||||||||||||||||||||    
T  624519 ttatgcaggggcaggggttcgaacccctgacaccccacttctccacatttaaaatgtgtgagct 624582  T

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Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 13161786 - 13161848
Alignment:
Q  178 ttatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    ||||||||||||||| |||| |||| ||||||| |||| || ||||||||||||| ||||||||    
T  13161786 ttatgcaggggtcggggttcgaaccccagacacaccac-ttctcacatttaaaatttgtgagct 13161848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 13578495 - 13578432
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagctt 242  Q
    |||||||||||||| |||| |||| | |||||||||||| | |||| ||||| |||||||||||    
T  13578495 tatgcaggggtcggggttcgaaccccggacaccccacttctccacaattaaattgtgtgagctt 13578432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 241
Target Start/End: Complemental strand, 38848151 - 38848089
Alignment:
Q  178 ttatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    ||||||||||||||| |||| |||| | |||||||||||| | ||||||| |||||||||||||    
T  38848151 ttatgcaggggtcggggttcgaaccccggacaccccacttctccacattt-aaatgtgtgagct 38848089  T

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Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 42381143 - 42381080
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagctt 242  Q
    |||| ||||||||| |||| |||| |||||||||||||| | |||| ||||| |||||||||||    
T  42381143 tatgtaggggtcggggttcgaacctcagacaccccacttctccacaattaaattgtgtgagctt 42381080  T

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Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 241
Target Start/End: Original strand, 5803544 - 5803578
Alignment:
Q  207 acaccccactttttcacatttaaaatgtgtgagct 241  Q
    ||||||||||| |||||||||||||||||||||||    
T  5803544 acaccccacttcttcacatttaaaatgtgtgagct 5803578  T

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Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 9477466 - 9477405
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    ||||||||| |||  ||||||||  |||||||||||||| |||||| ||||||||||||||||    
T  9477466 tatgcagggatcgtggttcaaactccagacaccccacttattcaca-ttaaaatgtgtgagct 9477405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 10402481 - 10402543
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    ||||||||||||||||||| |||| | |||||| ||||| | |||| ||||| ||||||||||    
T  10402481 tatgcaggggtcggagttcgaaccccggacacctcacttctccacaattaaattgtgtgagct 10402543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 23176751 - 23176690
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||||||| |||| |||| | ||||||||| || | |||||||||||||||||||||    
T  23176751 tatgcaggggtcggggttcgaaccccggacacccca-ttctccacatttaaaatgtgtgagct 23176690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 23778855 - 23778793
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    ||||||||||| || |||| |||| |||||||||||||| | |||| ||||| ||||||||||    
T  23778855 tatgcaggggttggggttcgaaccccagacaccccacttctccacaattaaattgtgtgagct 23778793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 26009691 - 26009773
Alignment:
Q  14 aatataaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaa 96  Q
    |||| ||| ||||| ||| ||| ||||| | |||||||||||||  | ||||||| | |||||||||||||||| ||||||||    
T  26009691 aatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatattttgaatacacaaattccaagataaa 26009773  T

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Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 47890735 - 47890797
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||||||| |||| |||| ||||||| |||||| | |||| ||||| ||||||||||    
T  47890735 tatgcaggggtcggggttcgaaccccagacactccacttctccacaattaaattgtgtgagct 47890797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 47929285 - 47929347
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||||||  |||| |||| | || ||||||||| | |||||||||||||||||||||    
T  47929285 tatgcaggggtcgaggttcgaacctcggaaaccccacttctccacatttaaaatgtgtgagct 47929347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 97
Target Start/End: Complemental strand, 39753990 - 39753953
Alignment:
Q  60 tgtttcaatgtgttgaatacacaaattctaagataaaa 97  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  39753990 tgtttcaatgtattgaatacacaaatcctaagataaaa 39753953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 50578594 - 50578655
Alignment:
Q  177 attatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtga 238  Q
    ||||||||||||||||  ||| |||| |||||  ||||||| | ||||||||||||||||||    
T  50578594 attatgcaggggtcgggattcgaaccccagactacccacttctacacatttaaaatgtgtga 50578655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 6336334 - 6336374
Alignment:
Q  45 aaagttgctttttgttgtttcaatgtgttgaatacacaaat 85  Q
    ||||||| |||||| | ||||||||||||||||||||||||    
T  6336334 aaagttgttttttgatatttcaatgtgttgaatacacaaat 6336374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 25098930 - 25098990
Alignment:
Q  39 gtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    ||||| ||| || |||||||||||| |||| | || |||||||||||| ||||||||||||    
T  25098930 gtagaaaaaattactttttgttgttacaatatattaaatacacaaattttaagataaaatt 25098990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 32885725 - 32885769
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcac 223  Q
    ||||||||||||||||||| |||| | |||||||||||| |||||    
T  32885725 tatgcaggggtcggagttcgaacctcggacaccccacttattcac 32885769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 40666876 - 40666836
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttt 219  Q
    ||||||||||||||||||| |||| ||||||||| ||||||    
T  40666876 tatgcaggggtcggagttcgaaccccagacaccctactttt 40666836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 48178783 - 48178743
Alignment:
Q  59 ttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    ||||||||||||||||||| ||||| || ||||||||||||    
T  48178783 ttgtttcaatgtgttgaatgcacaatttttaagataaaatt 48178743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 52031244 - 52031288
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcac 223  Q
    |||||||||||||| |||| |||| |||||||||||||| |||||    
T  52031244 tatgcaggggtcggggttcgaaccccagacaccccacttattcac 52031288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 54534876 - 54534928
Alignment:
Q  189 tcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||| |||| |||||| |||||||||||| | ||||||||| |||||||||||    
T  54534876 tcggggttcgaaccacggacaccccacttctccacatttaatatgtgtgagct 54534928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 54623040 - 54622988
Alignment:
Q  47 agttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    |||| ||||||||||||||||||| |||||| |  || |||||||||||||||    
T  54623040 agttactttttgttgtttcaatgtattgaatgcgtaatttctaagataaaatt 54622988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 56546507 - 56546463
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcac 223  Q
    |||||||||| ||| |||| ||||||||||||||||||| |||||    
T  56546507 tatgcaggggccggggttcgaaccacagacaccccacttattcac 56546463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 31732095 - 31732169
Alignment:
Q  23 aattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaa 97  Q
    |||| |||| |||||||| || |||||||||||||| ||||||||| |||||||||||||||| | |||||||||    
T  31732095 aattcataactttcatgttgaaaaagttgctttttgatgtttcaatatgttgaatacacaaatcccaagataaaa 31732169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 43767389 - 43767304
Alignment:
Q  14 aatataaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    |||||||||||||||||| ||| ||||||| ||| || ||||||| ||||| |||||||||||| ||||||||  |||| ||||||    
T  43767389 aatataaacaattgataaattttatgtagaaaaaattactttttgatgttttaatgtgttgaatgcacaaatttcaagacaaaatt 43767304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 25884018 - 25883956
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||||||| |||| |||| | |||||||||||| | |||||||||||||||||||||    
T  25884018 tatgcaggggtcggggttcgaaccccggacaccccacttctccacatttaaaatgtgtgagct 25883956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 54457569 - 54457492
Alignment:
Q  19 aaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaa 96  Q
    |||||| |||||| |||  |||||| | |||||||||||| | ||||||||||||||||||| ||||| |||||||||    
T  54457569 aaacaactgataactttgttgtagaaagagttgctttttgatatttcaatgtgttgaatacataaattttaagataaa 54457492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 26554235 - 26554286
Alignment:
Q  36 catgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattc 87  Q
    |||||||| ||||||| |||||| ||||||||||| ||||||||||||||||    
T  26554235 catgtagaaaaagttgttttttgatgtttcaatgtattgaatacacaaattc 26554286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 15496148 - 15496230
Alignment:
Q  14 aatataaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaa 96  Q
    |||||||| ||||||||| ||||||||    |||||||||||||| |  |||||| |||||||||||||||| | ||||||||    
T  15496148 aatataaataattgataactttcatgtgttaaaagttgctttttgataattcaatatgttgaatacacaaatcccaagataaa 15496230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 241
Target Start/End: Original strand, 16886638 - 16886684
Alignment:
Q  195 ttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||| |||||||||||||||| ||| |||||||||||||||||    
T  16886638 ttcaaacctcagacaccccacttttccacgtttaaaatgtgtgagct 16886684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 27329962 - 27329900
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||| ||| |||| |||| | |||||||||||| | |||||||||||||||||||||    
T  27329962 tatgcaggggccggggttcgaaccccggacaccccacttctccacatttaaaatgtgtgagct 27329900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 51879135 - 51879197
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||| ||| |||| |||| | |||||||||||| | |||||||||||||||||||||    
T  51879135 tatgcaggggccggggttcgaaccccggacaccccacttctccacatttaaaatgtgtgagct 51879197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 14795166 - 14795213
Alignment:
Q  194 gttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    ||||||||| | |||||||||||| | |||||||||||||||||||||    
T  14795166 gttcaaaccccggacaccccacttctccacatttaaaatgtgtgagct 14795213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 217
Target Start/End: Complemental strand, 18020309 - 18020270
Alignment:
Q  178 ttatgcaggggtcggagttcaaaccacagacaccccactt 217  Q
    ||||||||||||||| ||||||||| ||||||||||||||    
T  18020309 ttatgcaggggtcggtgttcaaaccccagacaccccactt 18020270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 26880216 - 26880278
Alignment:
Q  178 ttatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    ||||||||||||||| |||| |||  |||||||||||||| | ||||||| |||||||||||||    
T  26880216 ttatgcaggggtcggggttcgaacttcagacaccccacttctccacattt-aaatgtgtgagct 26880278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 241
Target Start/End: Complemental strand, 46845002 - 46844940
Alignment:
Q  178 ttatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||||||||||||| |||| | ||||||| |||| | ||||||| |||||||||||||    
T  46845002 ttatgcaggggtcggagttcgaaccccggacaccctacttctccacattt-aaatgtgtgagct 46844940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 241
Target Start/End: Complemental strand, 49443454 - 49443392
Alignment:
Q  178 ttatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    ||||||||||| |||||||| |||| | |||||||||||| | ||||||| |||||||||||||    
T  49443454 ttatgcaggggccggagttcgaaccccggacaccccacttctccacattt-aaatgtgtgagct 49443392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 15085714 - 15085652
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||||||| |||| |||| | |||||| ||||| | || ||||||||||||||||||    
T  15085714 tatgcaggggtcggggttcgaaccccggacacctcacttctccatatttaaaatgtgtgagct 15085652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 29373479 - 29373417
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||| ||| |||| |||| |||||||||||||| | |||| ||||| ||||||||||    
T  29373479 tatgcaggggccggggttcgaacctcagacaccccacttctccacaattaaattgtgtgagct 29373417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 31586987 - 31587049
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    ||||||||||||||||||| || | | |||||||||||| | |||| ||||| ||||||||||    
T  31586987 tatgcaggggtcggagttcgaatcccggacaccccacttctccacaattaaattgtgtgagct 31587049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 241
Target Start/End: Original strand, 32429795 - 32429849
Alignment:
Q  187 ggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    ||||||||||| |||| |||||||||||||| | |||| ||||| ||||||||||    
T  32429795 ggtcggagttcgaaccccagacaccccacttctccacaattaaattgtgtgagct 32429849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 44625255 - 44625193
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||| ||| |||| |||| | |||||||||||| | ||||||||||||||| |||||    
T  44625255 tatgcaggggccggggttcgaaccccggacaccccacttctccacatttaaaatgtgggagct 44625193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 9114076 - 9114113
Alignment:
Q  204 cagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||||||| | |||||||||||||||||||||    
T  9114076 cagacaccccacttctccacatttaaaatgtgtgagct 9114113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 10828521 - 10828570
Alignment:
Q  190 cggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgag 239  Q
    |||||||| |||| |||||||||||||| | |||||| ||||||||||||    
T  10828521 cggagttcgaaccccagacaccccacttctccacattaaaaatgtgtgag 10828570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 23512750 - 23512835
Alignment:
Q  14 aatataaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    |||| ||| |||||| || ||| ||| ||| || ||| ||||||||||||||||||| |||||| ||||| | | |||||||||||    
T  23512750 aatagaaataattgacaaattttatggagaaaatgttactttttgttgtttcaatgtcttgaatgcacaattcccaagataaaatt 23512835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 42461318 - 42461395
Alignment:
Q  19 aaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaa 96  Q
    ||||||||||||| ||| ||||| | ||| || |||||   ||||||||||||||||||| ||||||  |||||||||    
T  42461318 aaacaattgataacttttatgtaaaaaaaattacttttatatgtttcaatgtgttgaatatacaaatcttaagataaa 42461395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 25985470 - 25985394
Alignment:
Q  14 aatataaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaa 90  Q
    |||| ||| ||||||||| ||| || |||| ||||||| |||||  |||||| || ||||||||||| |||||||||    
T  25985470 aatagaaataattgataacttttatatagaaaaagttgttttttaatgtttcgatatgttgaatacaaaaattctaa 25985394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 43566854 - 43566810
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcac 223  Q
    |||||||||||||| |||| |||| |||||||||||||| |||||    
T  43566854 tatgcaggggtcggggttcgaacctcagacaccccacttattcac 43566810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 43774222 - 43774266
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcac 223  Q
    |||||||||||||| |||| |||| |||||||||||||| |||||    
T  43774222 tatgcaggggtcggggttcgaaccccagacaccccacttattcac 43774266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 53248706 - 53248634
Alignment:
Q  14 aatataaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaatt 86  Q
    |||| ||||||||||||| ||| ||||| | |||||| ||||||| | ||| ||| ||||||||| |||||||    
T  53248706 aatagaaacaattgataacttttatgtataaaaagttactttttggttttttaatatgttgaatatacaaatt 53248634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 11663016 - 11663100
Alignment:
Q  14 aatataaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    |||| ||||||||||||| ||||||||||| || ||||||||| | |||||||||||||| ||||||| | || ||||||||||||    
T  11663016 aatagaaacaattgataactttcatgtagaaaacgttgcttttcgatgtttcaatgtgttaaatacac-atttttaagataaaatt 11663100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 24423528 - 24423448
Alignment:
Q  19 aaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    ||||||| ||| | ||||||||||| ||||||| |||||| ||||||||||||||||||||| ||||   |||||||||||    
T  24423528 aaacaatcgatgactttcatgtagaaaaagttgttttttggtgtttcaatgtgttgaatacataaatctcaagataaaatt 24423448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 3237308 - 3237387
Alignment:
Q  20 aacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    |||||||||||| ||||||||| | ||| ||||| |||| |||||||||  |||||||||||||| || |||||||||||    
T  3237308 aacaattgataactttcatgtaaaaaaaattgctctttgatgtttcaataggttgaatacacaaaatccaagataaaatt 3237387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 12837911 - 12837990
Alignment:
Q  11 aagaatataaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaa 90  Q
    ||||||| ||||||||||||| ||| |||||||| ||||||||||||  ||||||||||| |||| |||| || ||||||    
T  12837911 aagaatagaaacaattgataaattttatgtagattaagttgctttttaatgtttcaatgtcttgattacataatttctaa 12837990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 34004782 - 34004859
Alignment:
Q  19 aaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaa 96  Q
    |||||||||| |  ||||||||||| |||||||  ||| | ||||||||||||||| |||||||||||| ||||||||    
T  34004782 aaacaattgaaatctttcatgtagaaaaagttgtctttggatgtttcaatgtgttgcatacacaaattccaagataaa 34004859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 13702065 - 13702127
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||| ||| ||||||||| | |||||||||||  | |||||||||||||||||||||    
T  13702065 tatgcaggggccggggttcaaaccccggacaccccactcctccacatttaaaatgtgtgagct 13702127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 30424937 - 30424883
Alignment:
Q  19 aaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgtt 73  Q
    ||||||||| ||| ||||||||||| |||||| ||||||| ||||||||||||||    
T  30424937 aaacaattgctaactttcatgtagaaaaagtttctttttgatgtttcaatgtgtt 30424883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 41072400 - 41072466
Alignment:
Q  24 attgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaa 90  Q
    |||||||| ||| |||| || ||| || |||||||||||||||||||||||||| ||||| ||||||    
T  41072400 attgataaattttatgttgaaaaaattactttttgttgtttcaatgtgttgaatgcacaatttctaa 41072466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 10690887 - 10690948
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagc 240  Q
    ||||||||||||||||||| |||| || ||||||||||| | |||| ||||| |||||||||    
T  10690887 tatgcaggggtcggagttcgaaccccaaacaccccacttctccacaattaaattgtgtgagc 10690948  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 379
Target Start/End: Original strand, 20520494 - 20520535
Alignment:
Q  338 atatttatatcaaaatcatttttattttaacctataacaaac 379  Q
    |||||||||| ||||||| |||||||||||||||||||||||    
T  20520494 atatttatattaaaatcacttttattttaacctataacaaac 20520535  T

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Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 24188510 - 24188571
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagc 240  Q
    |||||||||||||| |||| |||| |||||||||||||| | |||| ||||| |||||||||    
T  24188510 tatgcaggggtcggggttcgaaccccagacaccccacttctccacaattaaattgtgtgagc 24188571  T

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Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 18503495 - 18503447
Alignment:
Q  194 gttcaaaccacagacaccccactttttcacatttaaaatgtgtgagctt 242  Q
    |||| |||| |||||||||||||| | ||||||||||||||||||||||    
T  18503495 gttcgaaccccagacaccccacttctccacatttaaaatgtgtgagctt 18503447  T

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Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 9712228 - 9712165
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagctt 242  Q
    |||||||||||||| |||| |||| | |||||||||||| | |||| ||||| |||||||||||    
T  9712228 tatgcaggggtcggggttcgaaccccggacaccccacttctccacaattaaattgtgtgagctt 9712165  T

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Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 23223349 - 23223306
Alignment:
Q  53 tttttgttgtttcaatgtgttgaatacacaaattctaagataaa 96  Q
    ||||||||||||||||||||||||| ||||| || |||||||||    
T  23223349 tttttgttgtttcaatgtgttgaatgcacaatttttaagataaa 23223306  T

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Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 23237429 - 23237386
Alignment:
Q  53 tttttgttgtttcaatgtgttgaatacacaaattctaagataaa 96  Q
    ||||||||||||||||||||||||| ||||| || |||||||||    
T  23237429 tttttgttgtttcaatgtgttgaatgcacaatttttaagataaa 23237386  T

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Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 8903060 - 8902974
Alignment:
Q  14 aatataaacaattgataattttcatgtagataaagttgct-ttttgttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    |||| ||||||||||||| ||| || || ||||||||||| ||||  || ||||||  ||| |||||||||||||||| ||||||||    
T  8903060 aataaaaacaattgataacttttatataaataaagttgcttttttaatgcttcaatacgttaaatacacaaattctaaaataaaatt 8902974  T

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Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 21875658 - 21875596
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    ||||||||||||||||||| |||| | ||||| |||||||| || | ||||| ||||||||||    
T  21875658 tatgcaggggtcggagttcgaaccccggacactccacttttccataattaaattgtgtgagct 21875596  T

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Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 27162325 - 27162263
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    ||||||||||||||||||| |||| |   |||| ||||| | |||||||||||||||||||||    
T  27162325 tatgcaggggtcggagttcgaaccccgaccaccacacttctgcacatttaaaatgtgtgagct 27162263  T

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Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 241
Target Start/End: Original strand, 38697245 - 38697287
Alignment:
Q  199 aaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||||| ||| |||| |||||||||||||||||||||    
T  38697245 aaccacagacactccagttttccacatttaaaatgtgtgagct 38697287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 46645749 - 46645811
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||| ||| |||| |||| | |||||||||||  | |||||||||||||||||||||    
T  46645749 tatgcaggggccggggttcgaaccccggacaccccactcctccacatttaaaatgtgtgagct 46645811  T

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Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 46758282 - 46758344
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||||||||| |||| |||  | |||||||||||  | |||||||||||||||||||||    
T  46758282 tatgcaggggtcggggttcgaactccggacaccccactcctccacatttaaaatgtgtgagct 46758344  T

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Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 48693569 - 48693631
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagct 241  Q
    |||||||| || || ||||||||| ||||  | |||||| |||||||||||||||||||||||    
T  48693569 tatgcaggagttggggttcaaaccccagaggctccacttcttcacatttaaaatgtgtgagct 48693631  T

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Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 7711977 - 7711892
Alignment:
Q  14 aatataaacaattgataattttcatgtagataaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    |||| ||| |||||| || ||| ||||||| ||| ||| |||||| ||||||||||| || |||||||||||   |||||||||||    
T  7711977 aataaaaataattgagaacttttatgtagagaaaattgttttttgatgtttcaatgtcttaaatacacaaatctgaagataaaatt 7711892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 236
Target Start/End: Complemental strand, 25672416 - 25672371
Alignment:
Q  191 ggagttcaaaccacagacaccccactttttcacatttaaaatgtgt 236  Q
    |||||||||||| ||||||||| |||| |||||||||| |||||||    
T  25672416 ggagttcaaacctcagacaccctacttcttcacatttataatgtgt 25672371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 47144957 - 47145002
Alignment:
Q  194 gttcaaaccacagacaccccactttttcacatttaaaatgtgtgag 239  Q
    |||| |||| ||||||||||||||||||||| ||||| ||||||||    
T  47144957 gttcgaaccccagacaccccactttttcacaattaaattgtgtgag 47145002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 14818423 - 14818379
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcac 223  Q
    |||||||||||||| ||||||||| || ||||||||||| |||||    
T  14818423 tatgcaggggtcggggttcaaaccccaaacaccccacttattcac 14818379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 15265421 - 15265377
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcac 223  Q
    |||||||||||||| ||||||||| || ||||||||||| |||||    
T  15265421 tatgcaggggtcggggttcaaaccccaaacaccccacttattcac 15265377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 27788308 - 27788360
Alignment:
Q  178 ttatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaa 230  Q
    ||||||||||| ||| |||| |||| |||||||||||||| | ||||||||||    
T  27788308 ttatgcaggggccggggttcgaaccccagacaccccacttctccacatttaaa 27788360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 27791464 - 27791516
Alignment:
Q  178 ttatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaa 230  Q
    ||||||||||| ||| |||| |||| |||||||||||||| | ||||||||||    
T  27791464 ttatgcaggggccggggttcgaaccccagacaccccacttctccacatttaaa 27791516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 30806155 - 30806215
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgag 239  Q
    ||||||||||||||||||| |||| | |||| ||||||| | |||| ||||| ||||||||    
T  30806155 tatgcaggggtcggagttcgaaccccggacatcccacttctccacaattaaattgtgtgag 30806215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 41417333 - 41417289
Alignment:
Q  179 tatgcaggggtcggagttcaaaccacagacaccccactttttcac 223  Q
    |||||||||||||| |||| |||| |||||||||||||| |||||    
T  41417333 tatgcaggggtcggggttcgaaccccagacaccccacttattcac 41417289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 236389 - 236325
Alignment:
Q  177 attatgcaggggtcggagttcaaaccacagacaccccactttttcacatttaaaatgtgtgagctt 242  Q
    |||||||||||||||| |||| |||| | |||||||||||| | |||| |||||||||||||||||    
T  236389 attatgcaggggtcggggttcgaaccccggacaccccacttatccaca-ttaaaatgtgtgagctt 236325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0954 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0954
Description:

Target: scaffold0954; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 96 - 52
Alignment:
Q  52 ctttttgttgtttcaatgtgttgaatacacaaattctaagataaa 96  Q
    |||||||||||||||||||||||||| ||||| || |||||||||    
T  96 ctttttgttgtttcaatgtgttgaatgcacaatttttaagataaa 52  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 29750 - 29789
Alignment:
Q  60 tgtttcaatgtgttgaatacacaaattctaagataaaatt 99  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  29750 tgtttcaatgtgttgaatacacgaattccaagataaaatt 29789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 378
Target Start/End: Original strand, 10379 - 10427
Alignment:
Q  330 tctccaaaatatttatatcaaaatcatttttattttaacctataacaaa 378  Q
    |||| ||| ||||||||||||| ||| ||||||||||| ||||||||||    
T  10379 tctctaaattatttatatcaaattcacttttattttaatctataacaaa 10427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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