View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14082_low_7 (Length: 410)
Name: NF14082_low_7
Description: NF14082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14082_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 17 - 402
Target Start/End: Complemental strand, 21107780 - 21107395
Alignment:
| Q |
17 |
acaaacatggtcacttggagtggaagattcttctttagagaaggtattacctttaggtaacctcaagtaggttgatcctacaaagaatggtgaatgcctt |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21107780 |
acaaacatggtcacttggagtggaagattcttctttagagaaggtattacctttaggtaacctcaagtaggttgatcctacaaagaatggtgaatgcctt |
21107681 |
T |
|
| Q |
117 |
ccatttcgcaattgtgtttttgtataacacttataaaagccttttaataccccaaaaccgtactgaaatcctttacaattacaatcttctaagcacaatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21107680 |
ccatttcgcaattgtgtttttgtataacacttataaaagccttttaataccccaaaaccgtactgaaatcctttacaattacaatcttctaagcacaatt |
21107581 |
T |
|
| Q |
217 |
tctcacaagagctatagttactcataggaacataatgaatgtcatagccataaaactcaacatttaccatctcaaaaaaggtagacacacttctattgca |
316 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
21107580 |
tctcacaagaactatagttactcataggaacataatgaatgtcatagccataaaactcaacatttaccatctcaaaaaaggtagactcacttctattgca |
21107481 |
T |
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| Q |
317 |
agtaaaatcaaacataggctcacaaccataagaccaatcactatggttcttcactctataccctggaatacaagaacatattcttc |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21107480 |
agtaaaatcaaacataggctcacaaccataagaccaatcactatggttcttcactctataccctggaatacaagaacattttcttc |
21107395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 17 - 402
Target Start/End: Complemental strand, 21098161 - 21097776
Alignment:
| Q |
17 |
acaaacatggtcacttggagtggaagattcttctttagagaaggtattacctttaggtaacctcaagtaggttgatcctacaaagaatggtgaatgcctt |
116 |
Q |
| |
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||||| || |||||||||| |||||||||| ||||||||||||| |||||||||| || |||||||| || |||||| |||| ||| || |||| |
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| T |
21098161 |
acaaatatcgtcacttggatcggaagattctcttttagagaaggtactacctttaggcaatctcaagtacgtcgatcctttaaagcttggataaaacctt |
21098062 |
T |
|
| Q |
117 |
ccatttcgcaattgtgtttttgtataacacttataaaagccttttaataccccaaaaccgtactgaaatcctttacaattacaatcttctaagcacaatt |
216 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| |||| ||||||||| ||| | | || |||||| |||| ||||||||||||| || ||| || | |
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| T |
21098061 |
ccattttgcaattgtgtttttgtaaaacacctatacaagccttttttctcccaatatgagtgttgaaatgctttgcaattacaatcttgtatgcataaat |
21097962 |
T |
|
| Q |
217 |
tctcacaagagctatagttactcataggaacataatgaatgtcatagccataaaactcaacatttaccatctcaaaaaaggtagacacacttctattgca |
316 |
Q |
| |
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| ||||| |||||||||| || || |||||||| |||||||||||||||||||||||| ||||| ||||| || ||| ||||| ||||||| |
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| T |
21097961 |
ccaaacaagcactatagttacaaatttcaatataatgaaaatcatagccataaaactcaacattttttatctctaaaaatgttgactcacttttattgca |
21097862 |
T |
|
| Q |
317 |
agtaaaatcaaacataggctcacaaccataagaccaatcactatggttcttcactctataccctggaatacaagaacatattcttc |
402 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||||||| || | || |||| ||||||||||||||||||||| ||| |||||| |
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| T |
21097861 |
agtgaaatcaaacataggttcacaaccataagaccaatcattaggattgttcattctataccctggaatacaagagcattttcttc |
21097776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 291 - 391
Target Start/End: Original strand, 21131325 - 21131425
Alignment:
| Q |
291 |
aaaaaggtagacacacttctattgcaagtaaaatcaaacataggctcacaaccataagaccaatcactatggttcttcactctataccctggaatacaag |
390 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||| ||||| | ||||| |
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| T |
21131325 |
aaaaaagtagattcacttctattgcaagtaaaatcaaacagaggttcacaaccataagaccaatcactatggttcttcactttatatcctggcaaacaag |
21131424 |
T |
|
| Q |
391 |
a |
391 |
Q |
| |
|
| |
|
|
| T |
21131425 |
a |
21131425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 291 - 391
Target Start/End: Original strand, 18659487 - 18659587
Alignment:
| Q |
291 |
aaaaaggtagacacacttctattgcaagtaaaatcaaacataggctcacaaccataagaccaatcactatggttcttcactctataccctggaatacaag |
390 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||| ||||||||| |||| ||||| |||||||||||||| |||||||||| | ||||| |
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| T |
18659487 |
aaaaaggtagactcacttctattacaagtaaaatcaaacataggttcacaaccagaagagaaatcattatggttcttcactttataccctggcaaacaag |
18659586 |
T |
|
| Q |
391 |
a |
391 |
Q |
| |
|
| |
|
|
| T |
18659587 |
a |
18659587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 291 - 379
Target Start/End: Original strand, 21123759 - 21123847
Alignment:
| Q |
291 |
aaaaaggtagacacacttctattgcaagtaaaatcaaacataggctcacaaccataagaccaatcactatggttcttcactctataccc |
379 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| || ||||||||| |||| |||||||||||||||||||| ||||||| |
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| T |
21123759 |
aaaaaggtagactcacttctattgcaagtaaaatcaaacatgggttcacaaccagaagagaaatcactatggttcttcactttataccc |
21123847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 291 - 379
Target Start/End: Original strand, 21112365 - 21112453
Alignment:
| Q |
291 |
aaaaaggtagacacacttctattgcaagtaaaatcaaacataggctcacaaccataagaccaatcactatggttcttcactctataccc |
379 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||| |||| ||||| ||||||||||||||| |||||||||||| | ||||||| |
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|
| T |
21112365 |
aaaaaggtagactcacttttattgcaagtaaaatcaaacgtaggttcacatccataagaccaatcattatggttcttcattttataccc |
21112453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 18659241 - 18659296
Alignment:
| Q |
45 |
tcttctttagagaaggtattacctttaggtaacctcaagtaggttgatcctacaaa |
100 |
Q |
| |
|
||||||||||||||| |||||||||| || || |||||||| |||| ||||||||| |
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|
| T |
18659241 |
tcttctttagagaagttattaccttttggaaatctcaagtatgttgttcctacaaa |
18659296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 291 - 394
Target Start/End: Complemental strand, 39131411 - 39131308
Alignment:
| Q |
291 |
aaaaaggtagacacacttctattgcaagtaaaatcaaacataggctcacaaccataagaccaatcactatggttcttcactctataccctggaatacaag |
390 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||| | | ||||| |
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|
| T |
39131411 |
aaaaaggtagaatgacttctattgcaagtaaaatcaaacataggctcacaaccataagaccaatcattatggttcttcactttatatccttgcaaacaag |
39131312 |
T |
|
| Q |
391 |
aaca |
394 |
Q |
| |
|
|||| |
|
|
| T |
39131311 |
aaca |
39131308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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