View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14082_low_8 (Length: 378)

Name: NF14082_low_8
Description: NF14082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14082_low_8
NF14082_low_8
[»] chr1 (9 HSPs)
chr1 (90-368)||(5031686-5031960)
chr1 (236-318)||(17983258-17983340)
chr1 (237-316)||(41985251-41985330)
chr1 (245-318)||(20607548-20607621)
chr1 (238-316)||(3820299-3820377)
chr1 (245-317)||(5757798-5757870)
chr1 (245-318)||(20610819-20610892)
chr1 (245-313)||(6073242-6073310)
chr1 (244-316)||(41987968-41988040)
[»] chr2 (4 HSPs)
chr2 (237-318)||(27282655-27282736)
chr2 (236-317)||(36048279-36048360)
chr2 (239-317)||(36047048-36047126)
chr2 (245-317)||(44206819-44206891)
[»] chr8 (6 HSPs)
chr8 (237-318)||(43731576-43731657)
chr8 (245-318)||(43748330-43748403)
chr8 (237-317)||(18364532-18364612)
chr8 (237-316)||(27547174-27547253)
chr8 (244-318)||(9944022-9944096)
chr8 (244-317)||(35929245-35929318)
[»] chr3 (10 HSPs)
chr3 (236-317)||(27481699-27481780)
chr3 (238-318)||(31604695-31604775)
chr3 (235-317)||(48394373-48394455)
chr3 (237-318)||(41665423-41665504)
chr3 (229-316)||(52044101-52044187)
chr3 (244-318)||(39623992-39624066)
chr3 (239-318)||(47667102-47667181)
chr3 (245-318)||(39918624-39918697)
chr3 (245-318)||(48402436-48402509)
chr3 (254-301)||(48413993-48414040)
[»] chr7 (7 HSPs)
chr7 (234-318)||(31516559-31516643)
chr7 (245-324)||(28040454-28040533)
chr7 (245-318)||(33171122-33171195)
chr7 (245-318)||(44206096-44206169)
chr7 (237-317)||(39796744-39796824)
chr7 (244-318)||(23260674-23260748)
chr7 (245-316)||(38538910-38538981)
[»] chr5 (4 HSPs)
chr5 (245-317)||(32684983-32685055)
chr5 (244-317)||(8880743-8880816)
chr5 (245-318)||(20190346-20190419)
chr5 (237-318)||(20200366-20200447)
[»] chr4 (1 HSPs)
chr4 (245-317)||(24267487-24267559)
[»] scaffold0012 (1 HSPs)
scaffold0012 (255-318)||(184931-184994)
[»] chr6 (1 HSPs)
chr6 (267-299)||(30899737-30899769)


Alignment Details
Target: chr1 (Bit Score: 128; Significance: 4e-66; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 90 - 368
Target Start/End: Complemental strand, 5031960 - 5031686
Alignment:
Q  90 ctgggggaagagtattaactgtgtgatat--tnnnnnnncatttttcctttcaagattttgtaggaaaagaacgagaaaggttttcacgaacnnnnnnng 187  Q
    |||||||||||||||||| ||||||||||  |       ||||||||||||||||||||||||||||||||||||  |||||||||||||||       |    
T  5031960 ctgggggaagagtattaagtgtgtgatatattaaaaaaacatttttcctttcaagattttgtaggaaaagaacga--aaggttttcacgaacaaaaaaag 5031863  T
Q  188 cacgaaagacaaaactgcataattaatgttaattattgtcaaaatgaataa--aaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacag 285  Q
    | ||||||||||||||||||||||| ||| ||  | ||    |||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  5031862 cccgaaagacaaaactgcataattattgtcaa--aatg----aatgaaaaacaaaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacag 5031769  T
Q  286 gcgggaatacttaccactatactacaacgacttctatgtccacttggtcgtataaagtttaaatattcattcatttttctgtg 368  Q
    ||||||||||||||||||||||||||||||||||| ||||  ||||||||||  |  ||||||||||||||||||||||||||    
T  5031768 gcgggaatacttaccactatactacaacgacttctgtgtcttcttggtcgtaatatatttaaatattcattcatttttctgtg 5031686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 236 - 318
Target Start/End: Complemental strand, 17983340 - 17983258
Alignment:
Q  236 taaaaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 318  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17983340 taaaaaaaacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 17983258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 237 - 316
Target Start/End: Complemental strand, 41985330 - 41985251
Alignment:
Q  237 aaaaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 316  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985330 aaaaaagacgccgctgccggggattgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 41985251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 245 - 318
Target Start/End: Complemental strand, 20607621 - 20607548
Alignment:
Q  245 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20607621 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 20607548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 238 - 316
Target Start/End: Original strand, 3820299 - 3820377
Alignment:
Q  238 aaaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 316  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3820299 aaaaaaacgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 3820377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 245 - 317
Target Start/End: Complemental strand, 5757870 - 5757798
Alignment:
Q  245 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 317  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5757870 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 5757798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 245 - 318
Target Start/End: Complemental strand, 20610892 - 20610819
Alignment:
Q  245 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 318  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||    
T  20610892 cgccgctgccggggatcgaacccgggtcacccgggtgacaagcgggaatacttaccactatactacaacaactt 20610819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 6073242 - 6073310
Alignment:
Q  245 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 313  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6073242 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggtgggaatacttaccactatactacaac 6073310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 244 - 316
Target Start/End: Complemental strand, 41988040 - 41987968
Alignment:
Q  244 acgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 316  Q
    |||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41988040 acgccgctgccggggatcaaacctgggtcacccgggtgacaggcgggaatacttaccactatactacaacgac 41987968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 237 - 318
Target Start/End: Original strand, 27282655 - 27282736
Alignment:
Q  237 aaaaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27282655 aaaaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 27282736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 236 - 317
Target Start/End: Complemental strand, 36048360 - 36048279
Alignment:
Q  236 taaaaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 317  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36048360 taaaaaatacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 36048279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 239 - 317
Target Start/End: Complemental strand, 36047126 - 36047048
Alignment:
Q  239 aaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 317  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36047126 aaaatacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 36047048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 245 - 317
Target Start/End: Complemental strand, 44206891 - 44206819
Alignment:
Q  245 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 317  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44206891 cgccgctgccggggatcgaatccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 44206819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 237 - 318
Target Start/End: Original strand, 43731576 - 43731657
Alignment:
Q  237 aaaaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 318  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43731576 aaaaaaaacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 43731657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 245 - 318
Target Start/End: Original strand, 43748330 - 43748403
Alignment:
Q  245 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43748330 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 43748403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 237 - 317
Target Start/End: Complemental strand, 18364612 - 18364532
Alignment:
Q  237 aaaaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 317  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18364612 aaaaaaaacgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 18364532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 237 - 316
Target Start/End: Complemental strand, 27547253 - 27547174
Alignment:
Q  237 aaaaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 316  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27547253 aaaaaaaacgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 27547174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 244 - 318
Target Start/End: Original strand, 9944022 - 9944096
Alignment:
Q  244 acgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 318  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9944022 acgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 9944096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 244 - 317
Target Start/End: Complemental strand, 35929318 - 35929245
Alignment:
Q  244 acgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 317  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35929318 acgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 35929245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 236 - 317
Target Start/End: Original strand, 27481699 - 27481780
Alignment:
Q  236 taaaaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 317  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27481699 taaaaaagacgccgctgccggggatcgaacccggatcacccgcgtgacaggcgggaatacttaccactatactacaacgact 27481780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 238 - 318
Target Start/End: Complemental strand, 31604775 - 31604695
Alignment:
Q  238 aaaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 318  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31604775 aaaaaaacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 31604695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 235 - 317
Target Start/End: Original strand, 48394373 - 48394455
Alignment:
Q  235 ataaaaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 317  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48394373 ataaaaaaaacgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 48394455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 237 - 318
Target Start/End: Original strand, 41665423 - 41665504
Alignment:
Q  237 aaaaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 318  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41665423 aaaaaaaacgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 41665504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 229 - 316
Target Start/End: Complemental strand, 52044187 - 52044101
Alignment:
Q  229 aaatgaataaaaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 316  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52044187 aaataaataaaaaa-acgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 52044101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 244 - 318
Target Start/End: Original strand, 39623992 - 39624066
Alignment:
Q  244 acgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 318  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39623992 acgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 39624066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 239 - 318
Target Start/End: Original strand, 47667102 - 47667181
Alignment:
Q  239 aaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 318  Q
    |||| |||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  47667102 aaaaaacgccgttgccggggatcgaacccgggtcacttgcgtgacaggcgggaatacttaccactatactacaacgactt 47667181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 245 - 318
Target Start/End: Original strand, 39918624 - 39918697
Alignment:
Q  245 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 318  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  39918624 cgccgttgccggggatcgaacccgggtcacccgtgtgacaggcgggaatacttaccactatactacaacaactt 39918697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 318
Target Start/End: Original strand, 48402436 - 48402509
Alignment:
Q  245 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 318  Q
    ||||| |||| |||||| ||| | ||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  48402436 cgccgttgccagggatcaaactcaggtcacccgcgtgacagacgggaatacttaccactatactacaacaactt 48402509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 301
Target Start/End: Original strand, 48413993 - 48414040
Alignment:
Q  254 cggggatcgaacccgggtcacccgcgtgacaggcgggaatacttacca 301  Q
    |||||||| |||||| ||||||||||||||| ||||||||||||||||    
T  48413993 cggggatcaaacccgagtcacccgcgtgacaagcgggaatacttacca 48414040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 234 - 318
Target Start/End: Complemental strand, 31516643 - 31516559
Alignment:
Q  234 aataaaaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 318  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31516643 aataaaaaaaacgccgctgccgaggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 31516559  T

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Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 245 - 324
Target Start/End: Original strand, 28040454 - 28040533
Alignment:
Q  245 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgacttctatgt 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28040454 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgacttcaatgt 28040533  T

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Target: chr7; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 245 - 318
Target Start/End: Complemental strand, 33171195 - 33171122
Alignment:
Q  245 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33171195 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 33171122  T

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Target: chr7; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 245 - 318
Target Start/End: Complemental strand, 44206169 - 44206096
Alignment:
Q  245 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44206169 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 44206096  T

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Target: chr7; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 237 - 317
Target Start/End: Original strand, 39796744 - 39796824
Alignment:
Q  237 aaaaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 317  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39796744 aaaaaatacgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 39796824  T

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Target: chr7; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 244 - 318
Target Start/End: Complemental strand, 23260748 - 23260674
Alignment:
Q  244 acgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 318  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23260748 acgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 23260674  T

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Target: chr7; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 245 - 316
Target Start/End: Complemental strand, 38538981 - 38538910
Alignment:
Q  245 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 316  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38538981 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 38538910  T

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Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 245 - 317
Target Start/End: Complemental strand, 32685055 - 32684983
Alignment:
Q  245 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32685055 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 32684983  T

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Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 244 - 317
Target Start/End: Complemental strand, 8880816 - 8880743
Alignment:
Q  244 acgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 317  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8880816 acgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 8880743  T

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Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 245 - 318
Target Start/End: Original strand, 20190346 - 20190419
Alignment:
Q  245 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 318  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20190346 cgccgctgccggggatcgaacccgggtcacccacgtgacaggcgggaatacttaccactatactacaacgactt 20190419  T

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Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 237 - 318
Target Start/End: Original strand, 20200366 - 20200447
Alignment:
Q  237 aaaaaagacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 318  Q
    |||||| ||||||||| |||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  20200366 aaaaaacacgccgctgtcggggatcaaacccgggtcacccgcatgacaggcaggaatacttaccactatactacaacgactt 20200447  T

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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 245 - 317
Target Start/End: Original strand, 24267487 - 24267559
Alignment:
Q  245 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 317  Q
    ||||| ||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||    
T  24267487 cgccgttgccggggatcgaacccgggtcgtccgcgtgacaggcggaaatacttaccactatactacaacgact 24267559  T

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Target: scaffold0012 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 318
Target Start/End: Complemental strand, 184994 - 184931
Alignment:
Q  255 ggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 318  Q
    |||||| |||||||| |||||||| ||||||  || ||||||||||||||||||||||| ||||    
T  184994 ggggattgaacccggatcacccgcatgacagatggaaatacttaccactatactacaacaactt 184931  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 299
Target Start/End: Complemental strand, 30899769 - 30899737
Alignment:
Q  267 cgggtcacccgcgtgacaggcgggaatacttac 299  Q
    |||||||||||||||||||||||||||||||||    
T  30899769 cgggtcacccgcgtgacaggcgggaatacttac 30899737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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