View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14082_low_9 (Length: 367)
Name: NF14082_low_9
Description: NF14082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14082_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 9 - 350
Target Start/End: Original strand, 49913254 - 49913605
Alignment:
| Q |
9 |
cataggacagaaaatactcatagaagggaatgccttgcacacaatactactcctacataaactaacaaacccaaatgatatcgtaatgattaataattga |
108 |
Q |
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| T |
49913254 |
cataggacagaaaatactcatagaagggaatgccttgcacacaatactact---acataaactaacaaacccaaatgatatcgtaatgattaataattga |
49913350 |
T |
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| Q |
109 |
acatagaagcaaattgcttcctataaactagcatta-----ccggtctaaaaacgctataacttcaaatcaaagaatttgtaacgagtattctccgcctg |
203 |
Q |
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|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
49913351 |
acatagaagcaaattgcttcctataaactagcattaatttacccgtctaaaaacgctataacttcaaatcaaagaatttgtaacgagtattctccgccag |
49913450 |
T |
|
| Q |
204 |
caactg--caa--ctgcggacactatatacc----caaacaaacaaagtaatgcaaccataaaagatatttatttattggatgattaattatgtacaata |
295 |
Q |
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|||||| ||| ||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49913451 |
caactgctcaatcctgtagtatatatatacccaaacaaacaaacaaagtaatgcaaccataaaagatatttatttattggatgattaattatgtacaata |
49913550 |
T |
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| Q |
296 |
tttttacagtaatttcccaattcatataaaataaatacaatcctacaatgagcat |
350 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49913551 |
tttttacagtaatttcccaattcatataaaataaatacaatcctacaatgagcat |
49913605 |
T |
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