View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14083_high_2 (Length: 808)
Name: NF14083_high_2
Description: NF14083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14083_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 334 - 731
Target Start/End: Original strand, 52947969 - 52948368
Alignment:
| Q |
334 |
gtagagacgaagatgaaggtttattaacaaagtttatgtttctaaaatttgacagggatgagtgtgtcagttgtatttcaccaagggggtgaatttgtta |
433 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
52947969 |
gtagagacgaagatgaaggtttattaacaaagtttatgtttctaaaatttgacagggatgagtgtgtcaattgtatttcaccatgggggtgaatttgtta |
52948068 |
T |
|
| Q |
434 |
gggactacattttgtattacactgggggtcaagaacacgtagt--taatgggattgatagggataggtggtgttactttgaagctactggtatactaaaa |
531 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
52948069 |
cggactatattttgtattacactgggggtcaagaacacgtagtagtaatgggattgatagggataggtggtgttacttcgaagcgactggtatactaaaa |
52948168 |
T |
|
| Q |
532 |
gagttaggttatgatgatcaccttaagtatcgtttattgtggtatgttattgaagatgataaatacaaaaggattgttgatgataatgacactgatgttg |
631 |
Q |
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| T |
52948169 |
gagttaggttatgatgatcaccttaagtatcatttatggtggtatgttattgaagatgataaatacaaaaggattgttgatgataatgacactgatattg |
52948268 |
T |
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| Q |
632 |
ttggtgactatgttgttgagaacaaacgtgtggctcatttatatgttgaacatttagctataggtatggtaggttcacatttggggcagagttctatgga |
731 |
Q |
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| T |
52948269 |
ttggtgattatgttattgagaacaaacgtgtggctcatttatatgttgaacattcagttatagggatggtaggttcacatgtggggtagagttctatgga |
52948368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 24 - 272
Target Start/End: Original strand, 52947658 - 52947907
Alignment:
| Q |
24 |
agagtcatggtgtaagaacagagacggaggcaatttgacggtgaatcacggcaacaaagtgtaatcgatggtcaacgaaggtttgtgaaggtgatcgacg |
123 |
Q |
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| T |
52947658 |
agagtcatggtgtaagaacagagacgaaggtgagttgacggtgaatcacggcaacgaagtgtaatcaacagttagcgaaggtttttgaaggtgatcgacg |
52947757 |
T |
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| Q |
124 |
gtagaagaagcggtttttggcttgcgattgaggtagaacatttttttcatatcctct--gnnnnnnnnncttgttatattttgtttgttgtttgaatcaa |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || | | |||||||| ||| |||| |||||||||||||||||||||| |
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| T |
52947758 |
gtagaagaagcggtttttggcttgcgattgaggtagaaca-ttctaacctatcctcttatttttttcttcttcttatcttttgtttgttgtttgaatcaa |
52947856 |
T |
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| Q |
222 |
aaaatctttgaatgttagtttgtaatgatgtaaaagagtagaatggatgtc |
272 |
Q |
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| T |
52947857 |
aaaatctttgaatgctagtttataatgatgtaaaagagtagaatggatgtc |
52947907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 713 - 785
Target Start/End: Original strand, 52948371 - 52948443
Alignment:
| Q |
713 |
tggggcagagttctatggacttggacatttcatggggagttggaggtcaagaaggtcatgtagttgaagaagg |
785 |
Q |
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| T |
52948371 |
tggggcagagttctatggacttggacatgtcagggggagttggaggtcaagaaggtcatgtagttgaataagg |
52948443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 484 - 627
Target Start/End: Original strand, 31810722 - 31810865
Alignment:
| Q |
484 |
attgatagggataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtatcgtttattgtggtatgttattg |
583 |
Q |
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||||||| ||| | |||||| ||||||||||||||||| ||| | ||||| ||||| ||| |||||||||||||||| | |||| ||||||| |||||| |
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| T |
31810722 |
attgataaggacaagtggtgctactttgaagctactgggatattgaaagatttaggatattctgatcaccttaagtataggttatggtggtatattattg |
31810821 |
T |
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| Q |
584 |
aagatgataaatacaaaaggattgttgatgataatgacactgat |
627 |
Q |
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| T |
31810822 |
aggatgacaagtatgtaaggattatagatgacaatgacactgat |
31810865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 476 - 627
Target Start/End: Original strand, 7797472 - 7797623
Alignment:
| Q |
476 |
ttaatgggattgatagggataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtatcgtttattgtggta |
575 |
Q |
| |
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|||||| |||||||| ||| | |||||| ||||||||||||||||| ||| | ||||| ||||| ||| |||||||||||||||| | |||| |||||| |
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| T |
7797472 |
ttaatgagattgataaggacaagtggtgctactttgaagctactgggatattgaaagatttaggatattttgatcaccttaagtataggttatggtggta |
7797571 |
T |
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| Q |
576 |
tgttattgaagatgataaatacaaaaggattgttgatgataatgacactgat |
627 |
Q |
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| T |
7797572 |
tattattgaggatgacaagtatttaaggattatagatgacaatgacactgat |
7797623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 484 - 627
Target Start/End: Complemental strand, 30320491 - 30320348
Alignment:
| Q |
484 |
attgatagggataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtatcgtttattgtggtatgttattg |
583 |
Q |
| |
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||||||| ||| | |||||| ||||||||||||||||| ||| | ||||| ||||| ||| |||||||||||||||| | |||| ||||||| |||||| |
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| T |
30320491 |
attgataaggacaagtggtgctactttgaagctactgggatattgaaagatttaggatattctgatcaccttaagtataggttatggtggtatattattg |
30320392 |
T |
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| Q |
584 |
aagatgataaatacaaaaggattgttgatgataatgacactgat |
627 |
Q |
| |
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| T |
30320391 |
aggatgacaagtatgtaaggattatagatgacaatgacactgat |
30320348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 476 - 627
Target Start/End: Original strand, 19393467 - 19393617
Alignment:
| Q |
476 |
ttaatgggattgatagggataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtatcgtttattgtggta |
575 |
Q |
| |
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|||||| |||||||| ||| | |||||| ||||||||||||||| | ||| | ||||| ||||| |||||||||||||||||||| | |||| |||||| |
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| T |
19393467 |
ttaatgagattgataaggacaagtggtgctactttgaagctactaggatattgaaagatttaggatatgatgatcaccttaagta-aggttatggtggta |
19393565 |
T |
|
| Q |
576 |
tgttattgaagatgataaatacaaaaggattgttgatgataatgacactgat |
627 |
Q |
| |
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| || |||| ||||| || || ||||||| | ||||| |||||||||||| |
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| T |
19393566 |
tattgttgaggatgacaattatgtaaggattatagatgacaatgacactgat |
19393617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 484 - 627
Target Start/End: Original strand, 22055067 - 22055210
Alignment:
| Q |
484 |
attgatagggataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtatcgtttattgtggtatgttattg |
583 |
Q |
| |
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||||||| ||| | ||| || ||||||||||||||||| ||| | ||||| ||||| ||| |||||||||||||||| | |||| ||||||| |||||| |
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| T |
22055067 |
attgataaggacaagtgttgctactttgaagctactgggatattgaaagatttaggatattctgatcaccttaagtataggttatggtggtatattattg |
22055166 |
T |
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| Q |
584 |
aagatgataaatacaaaaggattgttgatgataatgacactgat |
627 |
Q |
| |
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| T |
22055167 |
aggatgacaagtatgtaaggattatagatgacaatgacactgat |
22055210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 494 - 625
Target Start/End: Complemental strand, 28430291 - 28430160
Alignment:
| Q |
494 |
ataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtatcgtttattgtggtatgttattgaagatgataa |
593 |
Q |
| |
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|||||||| | || |||||||| |||||||| |||| |||| || ||||||||||| ||||||||||| |||| ||||||| ||| ||| || || || |
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| T |
28430291 |
ataggtggagctattttgaagccactggtattttaaagcagtttggatatgatgatcatcttaagtatcgattatggtggtatattaatgaggaggacaa |
28430192 |
T |
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| Q |
594 |
atacaaaaggattgttgatgataatgacactg |
625 |
Q |
| |
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|| |||||| ||||||| |||||||||| |
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| T |
28430191 |
gtatgttaggattattgatgacaatgacactg |
28430160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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