View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14083_low_3 (Length: 806)
Name: NF14083_low_3
Description: NF14083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14083_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 633; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 114 - 793
Target Start/End: Original strand, 34191644 - 34192324
Alignment:
| Q |
114 |
tagaaattgttcccttaagttagtacttatacacaaatgccaaatttatattgacaggagaattggcccttagtttcatattgactatcttccttgtaac |
213 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34191644 |
tagaaattgttcccttaagttagtacttatacacaaatgccaaatttatattaacaggagaattggcccttagtttcatatagactatcttccttgtaac |
34191743 |
T |
|
| Q |
214 |
aatgtcatggaaacatcattatttgaatgcaggttactagttcccgatgaagagtcgcattgacgcggataaaaggcaggttcctttggcttaggcaatg |
313 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34191744 |
aatgtcatggaaacatcattatttgaatgcaggttactagttcccgatgaagagtcgcattgacgcggataaaaggcaggttcctttggattaggcaatg |
34191843 |
T |
|
| Q |
314 |
ctttttcaccattcagcattagaactgctgctgacatgtctggcctatcatcagctttctcttgaacacataaaagccctatctgaatacatctcaatat |
413 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34191844 |
ctttttcaccattcagcattagaactgcagctgacatgtctggcctatcatcagctttctcttgaacacataaaagccctatctgaatacatctcaatat |
34191943 |
T |
|
| Q |
414 |
ttcatcttctgctccaacagtggaatcgcgtagcgattcttctatcagctccaacggcgttgtttcgctccacaatctccatgcctaaggatacaaaagt |
513 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34191944 |
ttcagcttctgctccaacagtggaatcgcgtagcgattcttctatcagctccaacggcgttgtttcgctccacaatctccatgcctaaggatacaaaagt |
34192043 |
T |
|
| Q |
514 |
taagatagtgagttttgagtttacttttcaatcagtgttatcaaaaagacatagtaacataatagtgctacaaaatgatatt-tttggcgataaacaatt |
612 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| || |||||||||||||| |
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| T |
34192044 |
taagatagtgagttttgagtttacttttcaatcagtgttatcaaaaagatatagtaacataatagtgctacaaaatgttattgttcggcgataaacaatt |
34192143 |
T |
|
| Q |
613 |
taatgaaaatgttgtcaaatggctttttgcgatacgtgattgacaacactgctttgaatatgccaatacatatgttgtttcaagtggactaaatccttag |
712 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34192144 |
taatgaaaatgttgtcaaatggctttttgcaatacgtgattgacaacactgctttgaatatgccaatacatatgttgtttcaagtggactaaatccttag |
34192243 |
T |
|
| Q |
713 |
gcttacatatccaagaagatcaagatcatcatagtcacaatattcccggttcttgtttccactaattgtctctagtataat |
793 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34192244 |
acttacatatccaagaagatcaagatcatcatagtcacaatattcccggttcttgtttccactaattgtctctagtataat |
34192324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 175; E-Value: 9e-94
Query Start/End: Original strand, 135 - 552
Target Start/End: Complemental strand, 34208860 - 34208442
Alignment:
| Q |
135 |
agtacttatacacaaatgccaaatttatattgacaggagaattggcccttagtttcatattgactatcttccttgtaacaatgtcatggaaacatcatta |
234 |
Q |
| |
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||||||| |||| ||| ||||| ||||||||||| ||||||||||| || ||||||| | |||||||| ||| ||||| ||| |||||||| ||||| |
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| T |
34208860 |
agtacttctacaaaaaagccaacattatattgacaagagaattggcctttggtttcatttaaactatcttgcttctaacattgttatggaaacttcattg |
34208761 |
T |
|
| Q |
235 |
tttgaatgcaggttactagttcccgatgaagagtcgcattgacgcggataaaaggcaggttcctttggcttaggcaatgctttttcaccattcagcatta |
334 |
Q |
| |
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||||||| || ||| ||||||| ||||| ||| || |||| | ||| | ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34208760 |
tttgaatacaacttagtagttcctgatgacgagccgaattggtgtggaaagaaggctggttcctttggcttaggcaatgctttttcaccattcagcatta |
34208661 |
T |
|
| Q |
335 |
gaactgctgctgacatgtctggcctatcatcagctttctcttgaacacataaaagccctatctgaatacatctcaatatttcatcttctgctccaacagt |
434 |
Q |
| |
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|||||||||||||||||||||| || ||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||| || || | |
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| T |
34208660 |
gaactgctgctgacatgtctggtctgtcatcaggtctctcttgcacacataaaagccctatctgaatacatctcaatatttcaggttcggctacagcaat |
34208561 |
T |
|
| Q |
435 |
ggaatcgcgtagcgattcttctatcagctccaacggcgttgtttcgctccacaatctccatgccta-aggatacaaaagttaagatagtgagttttgagt |
533 |
Q |
| |
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||||||| ||| ||||| ||||||||| ||||||||||| || | ||||| |||||||||||| |||| | ||| ||||||| ||||||||||||| |
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|
| T |
34208560 |
cgaatcgcttagagattcatctatcagcatcaacggcgttgagtcacaccacattctccatgcctagaggacatgaaaattaagattgtgagttttgagt |
34208461 |
T |
|
| Q |
534 |
ttacttttcaatcagtgtt |
552 |
Q |
| |
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|||||||||||||| |||| |
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| T |
34208460 |
ttacttttcaatcattgtt |
34208442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 196 - 558
Target Start/End: Complemental strand, 34219967 - 34219603
Alignment:
| Q |
196 |
gactatcttccttgtaacaatgtcatggaaacatcattatttgaatgcaggttactagttcccgatgaagagtcgcattgacgcggataaaaggcaggtt |
295 |
Q |
| |
|
||||||||| ||||| ||||||||||||||| ||||| ||||||||||| |||||| | | ||||||||| | ||| || |||||| |||| |||| |
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|
| T |
34219967 |
gactatcttgcttgtggcaatgtcatggaaacttcattgtttgaatgcagcttactattctctgatgaagagccaggttggcgtggataataggctggtt |
34219868 |
T |
|
| Q |
296 |
cctttggcttaggcaatgctttttcaccattcagcattagaactgctgctgacatgtctggcctatcatcagctttctcttgaacacataaaagccctat |
395 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||| ||||| |
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| T |
34219867 |
cctttggattaggcaatgctttctcaccattcagcattagaactactgctgacatgtctggcctatcatcagatctctcttgaacacataaaagtcctat |
34219768 |
T |
|
| Q |
396 |
ctgaatacatctcaatatttcatcttctgctccaacagtggaatcgcgtagcgattcttctatcagctccaacggcgttgtttcgctccacaatctccat |
495 |
Q |
| |
|
||||||||||||||||||||| ||| ||| || || | ||||||| ||| |||| |||||||| |||||| || || ||||| ||||| ||||||| |
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|
| T |
34219767 |
ttgaatacatctcaatatttcaggttcagctacagcaatcgaatcgcctagacattcatctatcagttccaactgcattttttcggaccacattctccat |
34219668 |
T |
|
| Q |
496 |
gccta-aggatacaaaagttaagatagtgag-ttttgagtttacttttcaatcagtgttatcaaa |
558 |
Q |
| |
|
||||| |||| || ||| ||||||| ||||| |||| | |||||||||||||||||||| ||||| |
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|
| T |
34219667 |
gcctagaggacacgaaaattaagattgtgagtttttcaatttacttttcaatcagtgttgtcaaa |
34219603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 34191492 - 34191593
Alignment:
| Q |
18 |
aaatttagcataccaactaatctttcactaagtaatgctaatgctactctcaccttcacactcttactgcaaaaatctgaagtgatccaaacaacataga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34191492 |
aaatttagcataccaactaatctttcactaagtaatgctaatgctactctcaccttcacactcttactgcaaaaatctgaagtgatccaaacaacataga |
34191591 |
T |
|
| Q |
118 |
aa |
119 |
Q |
| |
|
|| |
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|
| T |
34191592 |
aa |
34191593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 702 - 793
Target Start/End: Complemental strand, 34219423 - 34219332
Alignment:
| Q |
702 |
taaatccttaggcttacatatccaagaagatcaagatcatcatagtcacaatattcccggttcttgtttccactaattgtctctagtataat |
793 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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|
| T |
34219423 |
taaagccttagacttacatatccaagaagatcaaggccatgatagtcacaatattccctgttcttgtttccactaattatctctagtataat |
34219332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 657 - 793
Target Start/End: Complemental strand, 34208311 - 34208176
Alignment:
| Q |
657 |
aacactgctttgaatatgccaatacatatgttgtttcaagtggactaaatccttaggcttacatatccaagaagatcaagatcatcatagtcacaatatt |
756 |
Q |
| |
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||||||| ||| ||| | |||| ||||||||||||| | |||||| |||| ||| ||||||||||||||||| |||||||||| || ||||| ||||| |
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| T |
34208311 |
aacactgttttcaatgtaccaaaacatatgttgttttat-tggactgaatcattatacttacatatccaagaaggtcaagatcatgatggtcactatatt |
34208213 |
T |
|
| Q |
757 |
cccggttcttgtttccactaattgtctctagtataat |
793 |
Q |
| |
|
||| |||||| |||||| | ||||||||||||||||| |
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|
| T |
34208212 |
ccctgttcttttttccagttattgtctctagtataat |
34208176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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