View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14083_low_4 (Length: 626)
Name: NF14083_low_4
Description: NF14083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14083_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 334 - 603
Target Start/End: Original strand, 52947969 - 52948240
Alignment:
| Q |
334 |
gtagagacgaagatgaaggtttattaacaaagtttatgtttctaaaatttgacagggatgagtgtgtcagttgtatttcaccaagggggtgaatttgtta |
433 |
Q |
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| T |
52947969 |
gtagagacgaagatgaaggtttattaacaaagtttatgtttctaaaatttgacagggatgagtgtgtcaattgtatttcaccatgggggtgaatttgtta |
52948068 |
T |
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| Q |
434 |
gggactacattttgtattacactgggggtcaagaacacgtagt--taatgggattgatagggataggtggtgttactttgaagctactggtatactaaaa |
531 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
52948069 |
cggactatattttgtattacactgggggtcaagaacacgtagtagtaatgggattgatagggataggtggtgttacttcgaagcgactggtatactaaaa |
52948168 |
T |
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| Q |
532 |
gagttaggttatgatgatcaccttaagtatcgtttattgtggtatgttattgaagatgataaatacaaaagg |
603 |
Q |
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| T |
52948169 |
gagttaggttatgatgatcaccttaagtatcatttatggtggtatgttattgaagatgataaatacaaaagg |
52948240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 24 - 272
Target Start/End: Original strand, 52947658 - 52947907
Alignment:
| Q |
24 |
agagtcatggtgtaagaacagagacggaggcaatttgacggtgaatcacggcaacaaagtgtaatcgatggtcaacgaaggtttgtgaaggtgatcgacg |
123 |
Q |
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| T |
52947658 |
agagtcatggtgtaagaacagagacgaaggtgagttgacggtgaatcacggcaacgaagtgtaatcaacagttagcgaaggtttttgaaggtgatcgacg |
52947757 |
T |
|
| Q |
124 |
gtagaagaagcggtttttggcttgcgattgaggtagaacatttttttcatatcctct--gnnnnnnnnncttgttatattttgtttgttgtttgaatcaa |
221 |
Q |
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| T |
52947758 |
gtagaagaagcggtttttggcttgcgattgaggtagaaca-ttctaacctatcctcttatttttttcttcttcttatcttttgtttgttgtttgaatcaa |
52947856 |
T |
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| Q |
222 |
aaaatctttgaatgttagtttgtaatgatgtaaaagagtagaatggatgtc |
272 |
Q |
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|||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
52947857 |
aaaatctttgaatgctagtttataatgatgtaaaagagtagaatggatgtc |
52947907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 484 - 590
Target Start/End: Original strand, 31810722 - 31810828
Alignment:
| Q |
484 |
attgatagggataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtatcgtttattgtggtatgttattg |
583 |
Q |
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||||||| ||| | |||||| ||||||||||||||||| ||| | ||||| ||||| ||| |||||||||||||||| | |||| ||||||| |||||| |
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| T |
31810722 |
attgataaggacaagtggtgctactttgaagctactgggatattgaaagatttaggatattctgatcaccttaagtataggttatggtggtatattattg |
31810821 |
T |
|
| Q |
584 |
aagatga |
590 |
Q |
| |
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| ||||| |
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| T |
31810822 |
aggatga |
31810828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 476 - 590
Target Start/End: Original strand, 7797472 - 7797586
Alignment:
| Q |
476 |
ttaatgggattgatagggataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtatcgtttattgtggta |
575 |
Q |
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|||||| |||||||| ||| | |||||| ||||||||||||||||| ||| | ||||| ||||| ||| |||||||||||||||| | |||| |||||| |
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| T |
7797472 |
ttaatgagattgataaggacaagtggtgctactttgaagctactgggatattgaaagatttaggatattttgatcaccttaagtataggttatggtggta |
7797571 |
T |
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| Q |
576 |
tgttattgaagatga |
590 |
Q |
| |
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| T |
7797572 |
tattattgaggatga |
7797586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 484 - 590
Target Start/End: Complemental strand, 30320491 - 30320385
Alignment:
| Q |
484 |
attgatagggataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtatcgtttattgtggtatgttattg |
583 |
Q |
| |
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||||||| ||| | |||||| ||||||||||||||||| ||| | ||||| ||||| ||| |||||||||||||||| | |||| ||||||| |||||| |
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| T |
30320491 |
attgataaggacaagtggtgctactttgaagctactgggatattgaaagatttaggatattctgatcaccttaagtataggttatggtggtatattattg |
30320392 |
T |
|
| Q |
584 |
aagatga |
590 |
Q |
| |
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| ||||| |
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| T |
30320391 |
aggatga |
30320385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 560
Target Start/End: Original strand, 19393467 - 19393551
Alignment:
| Q |
476 |
ttaatgggattgatagggataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagta |
560 |
Q |
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|||||| |||||||| ||| | |||||| ||||||||||||||| | ||| | ||||| ||||| |||||||||||||||||||| |
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| T |
19393467 |
ttaatgagattgataaggacaagtggtgctactttgaagctactaggatattgaaagatttaggatatgatgatcaccttaagta |
19393551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 484 - 590
Target Start/End: Original strand, 22055067 - 22055173
Alignment:
| Q |
484 |
attgatagggataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtatcgtttattgtggtatgttattg |
583 |
Q |
| |
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||||||| ||| | ||| || ||||||||||||||||| ||| | ||||| ||||| ||| |||||||||||||||| | |||| ||||||| |||||| |
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| T |
22055067 |
attgataaggacaagtgttgctactttgaagctactgggatattgaaagatttaggatattctgatcaccttaagtataggttatggtggtatattattg |
22055166 |
T |
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| Q |
584 |
aagatga |
590 |
Q |
| |
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| T |
22055167 |
aggatga |
22055173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 494 - 576
Target Start/End: Complemental strand, 28430291 - 28430209
Alignment:
| Q |
494 |
ataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtatcgtttattgtggtat |
576 |
Q |
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|||||||| | || |||||||| |||||||| |||| |||| || ||||||||||| ||||||||||| |||| ||||||| |
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| T |
28430291 |
ataggtggagctattttgaagccactggtattttaaagcagtttggatatgatgatcatcttaagtatcgattatggtggtat |
28430209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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