View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14083_low_6 (Length: 327)
Name: NF14083_low_6
Description: NF14083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14083_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 19258993 - 19258722
Alignment:
| Q |
18 |
aatgattgtataaggcatttaatacattcataatcctgtgnnnnnnnnn----aagaatgcttcccaaattttaggattgcactttattggttttttgta |
113 |
Q |
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| T |
19258993 |
aatgattgtataaggcatttaatacattcataatcctgtgtttttttttttttaagaatgcttcccaaattttaggattgcactttattggtattttgta |
19258894 |
T |
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| Q |
114 |
taaatcaaatatctcgcacacaagtgcatacactaatttctcgagtcccataaaaccgagaaattatattgtttcaactattttcctcccattttgattt |
213 |
Q |
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| T |
19258893 |
taaatcaaatatctcgcacacaaatgcatacactaatttctcgaatccgataaaaccgagaaattatattgtttcaactattttcctcccattttggttt |
19258794 |
T |
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| Q |
214 |
tgtgtaccgcacacaacatattcttgttgtcccaagttgcaggtaaccaatcacagagtttggttttgtgta |
285 |
Q |
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| T |
19258793 |
tgtgtaccacacacaacatattcttgttgtcccaagttgcaggtaaccaatcacaaagtttggttttgtgta |
19258722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 286 - 327
Target Start/End: Complemental strand, 19257701 - 19257660
Alignment:
| Q |
286 |
tcctacacgtgaaaatgtttggatttcgaaaagctccaccac |
327 |
Q |
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| T |
19257701 |
tcctacacgtgaaaatgtttggatttcgaaaagctccgccac |
19257660 |
T |
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