View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14083_low_7 (Length: 250)
Name: NF14083_low_7
Description: NF14083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14083_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 101 - 233
Target Start/End: Original strand, 15549955 - 15550086
Alignment:
| Q |
101 |
tgagtaatttacaatgtaattgagtgtttaaagcacatgcatttgataatttcacaaaaaccacacggaaaatactatagttgagggtgtgaaagtcgac |
200 |
Q |
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| T |
15549955 |
tgagtaatttacaatgtaattgagtgtttaa-gcacatgcatttgataatttcacaaaaaccacacggaaaatactatagttgagggtttgaatgtcgac |
15550053 |
T |
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| Q |
201 |
ctaagtctaattgatttaaattagtgtgaaact |
233 |
Q |
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| T |
15550054 |
ctaagtctaattgatttaaattaatatgaaact |
15550086 |
T |
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Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 15549696 - 15549789
Alignment:
| Q |
9 |
gagatgaaccattgttgtaggccaaatccttctggtttaagattggactattcttagcagggtctctcgaatccttcttatctgaaggtttttg |
102 |
Q |
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| T |
15549696 |
gagaagaaccattgttgtaggccaaatccttctggtttaagattggactattcttagcagggtctctcgaatccttcttatctgaaagtttttg |
15549789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 15581102 - 15581188
Alignment:
| Q |
16 |
accattgttgtaggccaaatccttctggtttaagattggactattcttagcagggtctctcgaatccttcttatctgaaggtttttg |
102 |
Q |
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| T |
15581102 |
accattgttgtaggccatatcaatctggtttgagattggacttttcttagtaggatctctcgaatccttcttatctgaaggtttttg |
15581188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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