View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14084_high_12 (Length: 380)
Name: NF14084_high_12
Description: NF14084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14084_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 173 - 249
Target Start/End: Original strand, 18411391 - 18411467
Alignment:
| Q |
173 |
ctaatcataggataagatcaagataatatgaagaaataatggaaacgtagtggaaaatatacatttgatgaagtctt |
249 |
Q |
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| T |
18411391 |
ctaatcataggataagatcaagataatatgaagaaataatgaaaacgtagtggaaaatatacatttgatgaagtctt |
18411467 |
T |
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Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 18411224 - 18411297
Alignment:
| Q |
8 |
aaattattcttcaagtgggagattgtta--gtaaatactcaagactatttagccaccaaattacttgataacat |
79 |
Q |
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| T |
18411224 |
aaattattcttcaagtgggagattgttatagtaaatactcaagactacttagccaccaaattacttgataacat |
18411297 |
T |
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Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 313 - 367
Target Start/End: Original strand, 18411469 - 18411523
Alignment:
| Q |
313 |
aatcagcacttataccttggtggctacttaatgcataaaattatggtcttagtga |
367 |
Q |
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| T |
18411469 |
aatcagcacttataccttagtggctacttaatgcataaaattatggtcttagtga |
18411523 |
T |
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