View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14084_high_19 (Length: 239)
Name: NF14084_high_19
Description: NF14084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14084_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 31202204 - 31201995
Alignment:
| Q |
15 |
cacagaggaaccagagaaatattacgagttaatatgcaattttgtcaacaaaaccaaagcctcattaggagtgatttggaacacctttgaagacttggaa |
114 |
Q |
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| T |
31202204 |
cacaaaggaaccagagaaatattacgagttaatatgcaattttgtcaacaaaaccaaagcctcattaggagtgatttggaacacctttgaagacttggaa |
31202105 |
T |
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| Q |
115 |
tcattaccactat---cactaagccaacaattttcaattccaatgttcccaataggaccttttcacaagtatttccctactaacaatacatcttcttcta |
211 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31202104 |
tcattaccactatcaacactaagccaacaattttcaattccaatgttcccaataggaccttttcacaagtatttccctactaacaatacatcttcttcta |
31202005 |
T |
|
| Q |
212 |
gcagcttaat |
221 |
Q |
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|||||||||| |
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| T |
31202004 |
gcagcttaat |
31201995 |
T |
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