View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14084_high_22 (Length: 219)
Name: NF14084_high_22
Description: NF14084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14084_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 38419437 - 38419242
Alignment:
| Q |
1 |
caaatggtttaccaccaggggtaaatccaactataccaactctagcattacaaagaattgataaatcacttgctttcttaaaaagaccacttcttctctt |
100 |
Q |
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| T |
38419437 |
caaatggtttaccaccaggggtaaatccaactataccaactctagcattacaaagaattgataaatcacttgctttcttaaaaagaccacttcttctctt |
38419338 |
T |
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| Q |
101 |
tgaaaatgtgacattcctagccttcttgttatccactaattctatctctannnnnnnacgacccatgattcacaaactttgttcttggtataaact |
196 |
Q |
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| T |
38419337 |
tgaaaatgtgacattcctagccttcttgttatccactaattctatctctatttttttacgacccatgattcacaaactttgttcttggtataaact |
38419242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 38435902 - 38435728
Alignment:
| Q |
1 |
caaatggtttaccaccaggggtaaatccaactataccaactctagcattacaaagaattgataaatcacttgctttcttaaaaagaccacttcttctctt |
100 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||| | |||||| |||| || |
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| T |
38435902 |
caaatggattaccacttggggtaaatccaactataccaactctagcattacaaagaattgacaactcacttgccttcttaaatataccactctttctttt |
38435803 |
T |
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| Q |
101 |
tgaaaatgtgacattcctagccttcttgttatccactaattctatctctannnnnnnacgacccatgattcacaa |
175 |
Q |
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|||||||||||||| |||||| || |||| ||||| | ||| ||||||| |||||||||||||||||| |
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| T |
38435802 |
tgaaaatgtgacatacctagcactcctgttctccacaagttccatctctatctttttacgacccatgattcacaa |
38435728 |
T |
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