View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14084_high_8 (Length: 430)

Name: NF14084_high_8
Description: NF14084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14084_high_8
NF14084_high_8
[»] chr7 (6 HSPs)
chr7 (17-414)||(33882878-33883273)
chr7 (125-224)||(13486846-13486945)
chr7 (60-106)||(9962885-9962931)
chr7 (124-198)||(22615828-22615902)
chr7 (124-178)||(37946968-37947022)
chr7 (146-198)||(6900170-6900222)
[»] chr6 (5 HSPs)
chr6 (123-200)||(976891-976968)
chr6 (24-122)||(26854866-26854963)
chr6 (124-206)||(10907897-10907979)
chr6 (145-224)||(10642422-10642501)
chr6 (124-178)||(9189857-9189911)
[»] chr5 (2 HSPs)
chr5 (124-211)||(17444931-17445018)
chr5 (137-206)||(14136869-14136938)
[»] chr2 (3 HSPs)
chr2 (123-200)||(24725563-24725640)
chr2 (124-205)||(32253189-32253270)
chr2 (124-206)||(23661939-23662021)
[»] chr8 (1 HSPs)
chr8 (137-224)||(24505076-24505163)
[»] chr3 (2 HSPs)
chr3 (145-211)||(22155116-22155182)
chr3 (123-195)||(13928112-13928183)


Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 17 - 414
Target Start/End: Complemental strand, 33883273 - 33882878
Alignment:
Q  17 cataggttccattcactataaaaccagataaaaagataaattctaatcagtgatcactaataaacaaacaaagctactcaatcctaagtttcattcacta 116  Q
    |||||||| |||||||||||||||||  |||||||||||||||||||||   ||||||||||||  |||||| |||||||||||||||||||||||||||    
T  33883273 cataggtttcattcactataaaaccaactaaaaagataaattctaatcac--atcactaataaatcaacaaaactactcaatcctaagtttcattcacta 33883176  T
Q  117 taaaacatgtaacaccatacttcccgatgataaatattaaatgataagaatttatttaataaataggatattacaaaactcgacgttataacacatatta 216  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33883175 taaaacatataacaccatacttcccgatgataaatattaaatgataagaatttatttaataaataggatattacaaaactcgacgttataacacatatta 33883076  T
Q  217 acaataaataattcttttaaaaaacatttgtgttaagtaaactctatttacattattatagaaattataagggcataaggaataaagatattgttgtttg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33883075 acaataaataattcttttaaaaaacatttgtgttaagtaaactctatttacattattatagaaattataagggcataaggaattaagatattgttgtttg 33882976  T
Q  317 atttgttagagattgaaggtgaaatcagaaaaacattggatcaaccgagagttgggatgatcaaaattggaattgaaatcatacaaaacttacttctt 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33882975 atttgttagagattgaaggtgaaatcagaaaaacattggatcaaccgagagttgggatgatcaaaattggaattgaaatcatacaaaacttacttctt 33882878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 125 - 224
Target Start/End: Complemental strand, 13486945 - 13486846
Alignment:
Q  125 gtaacaccatacttcccgatgataaatattaaatgataagaatttatttaataaataggatattacaaaactcgacgttataacacatattaacaataaa 224  Q
    |||||||| || ||||| | ||||| |||||||| |||||||| |||||||||   ||||| |||||||||||| | ||||| |||| | ||||||||||    
T  13486945 gtaacaccttatttcccaacgataattattaaataataagaatatatttaatattaaggatgttacaaaactcggcattatatcacagaataacaataaa 13486846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 9962885 - 9962931
Alignment:
Q  60 taatcagtgatcactaataaacaaacaaagctactcaatcctaagtt 106  Q
    |||||| ||| ||||||||||| |||||| |||||||||||||||||    
T  9962885 taatcactgaacactaataaaccaacaaaactactcaatcctaagtt 9962931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 198
Target Start/End: Complemental strand, 22615902 - 22615828
Alignment:
Q  124 tgtaacaccatacttcccgatgataaatattaaatgataagaatttatttaataaataggatattacaaaactcg 198  Q
    ||||||||| || ||||| | ||||| |||||||| |||||||| |||||||||   ||||| ||||||||||||    
T  22615902 tgtaacaccctatttcccaacgataattattaaataataagaatatatttaatagtaaggatgttacaaaactcg 22615828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 178
Target Start/End: Complemental strand, 37947022 - 37946968
Alignment:
Q  124 tgtaacaccatacttcccgatgataaatattaaatgataagaatttatttaataa 178  Q
    ||||||||| |  ||||||| |||||||||||||| |||||||| ||||||||||    
T  37947022 tgtaacaccctttttcccgacgataaatattaaataataagaatatatttaataa 37946968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 6900222 - 6900170
Alignment:
Q  146 ataaatattaaatgataagaatttatttaataaataggatattacaaaactcg 198  Q
    |||| |||||||| || ||||| ||||||||||||||||| ||| ||||||||    
T  6900222 ataattattaaataatgagaatatatttaataaataggatgttataaaactcg 6900170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 123 - 200
Target Start/End: Original strand, 976891 - 976968
Alignment:
Q  123 atgtaacaccatacttcccgatgataaatattaaatgataagaatttatttaataaataggatattacaaaactcgac 200  Q
    |||||||||| || ||||||| |||||||||||||| |||||||||||| ||||||  ||||| ||||||||||||||    
T  976891 atgtaacaccctatttcccgacgataaatattaaataataagaatttatataataataaggatgttacaaaactcgac 976968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 26854866 - 26854963
Alignment:
Q  24 tccattcactataaaaccagataaaaagataaattctaatcagtgatcactaataaacaaacaaagctactcaatcctaagtttcattcactataaaac 122  Q
    ||||||||| |||||||||  | ||||||||||   |||||| |||||||||| |||| |||||| ||||||||||||||||| | |||||||||||||    
T  26854866 tccattcac-ataaaaccaactgaaaagataaaccttaatcattgatcactaaaaaaccaacaaaactactcaatcctaagttcccttcactataaaac 26854963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 124 - 206
Target Start/End: Complemental strand, 10907979 - 10907897
Alignment:
Q  124 tgtaacaccatacttcccgatgataaatattaaatgataagaatttatttaataaataggatattacaaaactcgacgttata 206  Q
    ||||||||| || ||||| ||||||| |||||||| |||||||| |||||||||   ||||| |||||||||||||| |||||    
T  10907979 tgtaacaccctatttcccaatgataattattaaataataagaatatatttaatagtaaggatgttacaaaactcgacattata 10907897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 10642501 - 10642422
Alignment:
Q  145 gataaatattaaatgataagaatttatttaataaataggatattacaaaactcgacgttataacacatattaacaataaa 224  Q
    ||||| |||||||| |||||||| |||||||||   | ||| |||||||||||||| ||||| |||| | ||||||||||    
T  10642501 gataattattaaataataagaatatatttaatagtaaagatgttacaaaactcgacattatatcacaaaataacaataaa 10642422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 178
Target Start/End: Original strand, 9189857 - 9189911
Alignment:
Q  124 tgtaacaccatacttcccgatgataaatattaaatgataagaatttatttaataa 178  Q
    ||||||||| || ||||  | |||||||||||||| |||||||||||||||||||    
T  9189857 tgtaacaccctatttcctaacgataaatattaaataataagaatttatttaataa 9189911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 124 - 211
Target Start/End: Original strand, 17444931 - 17445018
Alignment:
Q  124 tgtaacaccatacttcccgatgataaatattaaatgataagaatttatttaataaataggatattacaaaactcgacgttataacaca 211  Q
    ||||||| |||||||||||| |||||||||||||| |||| ||||||||||| |   | ||| |||||||||||||| ||||| ||||    
T  17444931 tgtaacatcatacttcccgacgataaatattaaataataaaaatttatttaacagtaaagatgttacaaaactcgacattatatcaca 17445018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 14136938 - 14136869
Alignment:
Q  137 ttcccgatgataaatattaaatgataagaatttatttaataaataggatattacaaaactcgacgttata 206  Q
    |||||| |||||||||| |||| |||||||||||||||||||  ||||| |||||||||| ||| |||||    
T  14136938 ttcccgctgataaatatcaaataataagaatttatttaataataaggatgttacaaaacttgacattata 14136869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 200
Target Start/End: Complemental strand, 24725640 - 24725563
Alignment:
Q  123 atgtaacaccatacttcccgatgataaatattaaatgataagaatttatttaataaataggatattacaaaactcgac 200  Q
    ||||||||||||| ||||||| ||||| |||||||| |||| ||| ||||||||| | | ||| ||||||||||||||    
T  24725640 atgtaacaccataattcccgacgataattattaaataataaaaatatatttaatagagaagatgttacaaaactcgac 24725563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 205
Target Start/End: Complemental strand, 32253270 - 32253189
Alignment:
Q  124 tgtaacaccatacttcccgatgataaatattaaatgataagaatttatttaataaataggatattacaaaactcgacgttat 205  Q
    ||||||||| || || || | |||||| ||||||| |||| ||||||||||||||| ||||| |||||||||||||| ||||    
T  32253270 tgtaacaccctattttccaacgataaacattaaataataataatttatttaataaaaaggatgttacaaaactcgacattat 32253189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 206
Target Start/End: Complemental strand, 23662021 - 23661939
Alignment:
Q  124 tgtaacaccatacttcccgatgataaatattaaatgataagaatttatttaataaataggatattacaaaactcgacgttata 206  Q
    ||||||||| || || || | ||||| |||||||| |||||||| |||||||||   ||||| |||||||||||||| |||||    
T  23662021 tgtaacaccttattttccaacgataattattaaataataagaatatatttaatagtaaggatgttacaaaactcgacattata 23661939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 224
Target Start/End: Original strand, 24505076 - 24505163
Alignment:
Q  137 ttcccgatgataaatattaaatgataagaatttatttaataaataggatattacaaaactcgacgttataacacatattaacaataaa 224  Q
    ||||||| |||||||||||||| |||||||||||||||||||  | |||  ||||||||| ||| ||||| |||| | ||| ||||||    
T  24505076 ttcccgacgataaatattaaataataagaatttatttaataataatgatgctacaaaacttgacattatatcacaaaataataataaa 24505163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 22155116 - 22155182
Alignment:
Q  145 gataaatattaaatgataagaatttatttaataaataggatattacaaaactcgacgttataacaca 211  Q
    |||||||||||||| |||| ||| ||||||||||  ||||| ||||| |||||||| ||||| ||||    
T  22155116 gataaatattaaataataataatatatttaataataaggatgttacacaactcgactttatatcaca 22155182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 195
Target Start/End: Complemental strand, 13928183 - 13928112
Alignment:
Q  123 atgtaacaccatacttcccgatgataaatattaaatgataagaatttatttaataaataggatattacaaaac 195  Q
    |||||||| | ||||| |||| ||||||||| |||| ||||||||||| |||||||  ||||| |||||||||    
T  13928183 atgtaacatcctactttccgacgataaatat-aaataataagaatttaattaataataaggatgttacaaaac 13928112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University