View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14084_high_9 (Length: 420)
Name: NF14084_high_9
Description: NF14084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14084_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 10 - 402
Target Start/End: Complemental strand, 2285984 - 2285592
Alignment:
| Q |
10 |
atgaagagatttatatagaaaaagaaagaaagttttcacttactattagaagctttaggaggatagagagtcctaagagcaacagaatcaataagaggac |
109 |
Q |
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| T |
2285984 |
atgaagagatttatatagaaaaagaaagaaagttttcacttactattagaagctttaggaggatagagagtcctaagagcaacagaatcaataagaggac |
2285885 |
T |
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| Q |
110 |
cacaagcaggatcttcttcaacgccaggattatgaataaccatttccacaacatcatattcagctttaaaaccataagcaattggatcccaaccactact |
209 |
Q |
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| T |
2285884 |
cacaagcaggatcttcttcaacaccaggattatgaataaccatttccacaacatcatattcagctttaaaaccataagcaattggatcccaaccactact |
2285785 |
T |
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| Q |
210 |
tgtatacaatgtttgtataggaataacaccaaaatcaggagcaacagatatattaattctttcttcttgtgcacatgtacgtgccaccataaaagttatt |
309 |
Q |
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| T |
2285784 |
tgtatacaatgtttgtataggaataacaccaaaatcaggagcaacagatatattaattctttcttcttgtgcacatgtacgtgccaccataaaagttatt |
2285685 |
T |
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| Q |
310 |
gaataatacattcctttaatcacttttatcctttgttttattgatgcttcatttcctagtctcactgcatatgcaccttctggtacaactagt |
402 |
Q |
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| T |
2285684 |
gaataatacattcctttaatcacttttatcctttgttttattgatgcttcatttcctagtctcactgcatatgcaccttctggtacaactagt |
2285592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 2289761 - 2289652
Alignment:
| Q |
13 |
aagagatttatatagaaaaagaaagaaagttttcacttactattagaagctttaggaggatagagagtcctaagagcaacagaatcaataagaggaccac |
112 |
Q |
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| T |
2289761 |
aagagatttatgtagaaaaagaaagaaagtaga-acttactattagaagctttaggaggatagag--tcctaagagcaacagaatcattaagaagtccac |
2289665 |
T |
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| Q |
113 |
aagcaggatcttc |
125 |
Q |
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| T |
2289664 |
aagcaggatcttc |
2289652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 44409193 - 44409144
Alignment:
| Q |
87 |
agcaacagaatcaataagaggaccacaagcaggatcttcttcaacgccag |
136 |
Q |
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| T |
44409193 |
agcaacagaatcaataagtggaccacaagctggatcatcttcaacaccag |
44409144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 398
Target Start/End: Complemental strand, 44408912 - 44408867
Alignment:
| Q |
353 |
atgcttcatttcctagtctcactgcatatgcaccttctggtacaac |
398 |
Q |
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| T |
44408912 |
atgcttcatttcctagcctaacagcataagcaccttctggtacaac |
44408867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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